Hb_020247_050

Information

Type -
Description -
Location Contig20247: 65757-66245
Sequence    

Annotation

kegg
ID rcu:RCOM_0497680
description heat-shock protein, putative
nr
ID XP_011036031.1
description PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
swissprot
ID P05478
description 18.5 kDa class I heat shock protein OS=Glycine max GN=HSP18.5-C PE=3 SV=1
trembl
ID B9SWM7
description Heat-shock protein, putative OS=Ricinus communis GN=RCOM_0497680 PE=3 SV=1
Gene Ontology
ID GO:0005737
description kda class i heat shock protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20551: 65580-66348
cDNA
(Sanger)
(ID:Location)		 008_A09.ab1: 65624-66340 , 040_G06.ab1: 65582-66340

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020247_050 0.0 - - PREDICTED: 18.1 kDa class I heat shock protein-like [Populus euphratica]
2 Hb_007257_010 0.1620214388 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
3 Hb_000302_300 0.1721327274 - - PREDICTED: heat shock protein 83 [Populus euphratica]
4 Hb_006573_010 0.1788910069 - - heat shock protein [Hevea brasiliensis]
5 Hb_002843_220 0.1848005773 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
6 Hb_000796_050 0.19171452 - - galactinol synthase [Manihot esculenta]
7 Hb_012753_040 0.2190144959 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
8 Hb_010407_190 0.2273262516 - - phosphate transporter [Manihot esculenta]
9 Hb_020094_020 0.2290895175 - - PREDICTED: 17.1 kDa class II heat shock protein-like [Pyrus x bretschneideri]
10 Hb_000488_010 0.2379288267 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
11 Hb_000105_020 0.2409784851 - - PREDICTED: serine/threonine-protein kinase TOR-like [Malus domestica]
12 Hb_001766_040 0.2416174557 - - chaperone clpb, putative [Ricinus communis]
13 Hb_000015_160 0.2420021069 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
14 Hb_000631_140 0.2464191354 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
15 Hb_028795_010 0.2471902132 - - PREDICTED: TMV resistance protein N-like [Jatropha curcas]
16 Hb_001999_280 0.2483801162 - - PREDICTED: phosphomethylpyrimidine synthase, chloroplastic isoform X2 [Jatropha curcas]
17 Hb_009674_080 0.2542392362 - - PREDICTED: branchpoint-bridging protein [Jatropha curcas]
18 Hb_001235_100 0.2544266264 - - heat-shock protein, putative [Ricinus communis]
19 Hb_119886_040 0.2574302792 - - -
20 Hb_000991_050 0.2609925865 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]

Gene co-expression network

sample Hb_020247_050 Hb_020247_050 Hb_007257_010 Hb_007257_010 Hb_020247_050--Hb_007257_010 Hb_000302_300 Hb_000302_300 Hb_020247_050--Hb_000302_300 Hb_006573_010 Hb_006573_010 Hb_020247_050--Hb_006573_010 Hb_002843_220 Hb_002843_220 Hb_020247_050--Hb_002843_220 Hb_000796_050 Hb_000796_050 Hb_020247_050--Hb_000796_050 Hb_012753_040 Hb_012753_040 Hb_020247_050--Hb_012753_040 Hb_010407_190 Hb_010407_190 Hb_007257_010--Hb_010407_190 Hb_007257_010--Hb_006573_010 Hb_027380_230 Hb_027380_230 Hb_007257_010--Hb_027380_230 Hb_008147_050 Hb_008147_050 Hb_007257_010--Hb_008147_050 Hb_001766_040 Hb_001766_040 Hb_007257_010--Hb_001766_040 Hb_000302_300--Hb_002843_220 Hb_021254_010 Hb_021254_010 Hb_000302_300--Hb_021254_010 Hb_000302_300--Hb_006573_010 Hb_000631_140 Hb_000631_140 Hb_000302_300--Hb_000631_140 Hb_000991_050 Hb_000991_050 Hb_000302_300--Hb_000991_050 Hb_006573_010--Hb_012753_040 Hb_006573_010--Hb_001766_040 Hb_006573_010--Hb_000991_050 Hb_020094_020 Hb_020094_020 Hb_002843_220--Hb_020094_020 Hb_002843_220--Hb_000796_050 Hb_006721_070 Hb_006721_070 Hb_002843_220--Hb_006721_070 Hb_002843_220--Hb_006573_010 Hb_000796_050--Hb_000302_300 Hb_000796_050--Hb_006573_010 Hb_022880_020 Hb_022880_020 Hb_000796_050--Hb_022880_020 Hb_000796_050--Hb_000991_050 Hb_000015_160 Hb_000015_160 Hb_012753_040--Hb_000015_160 Hb_009674_080 Hb_009674_080 Hb_012753_040--Hb_009674_080 Hb_012753_040--Hb_000991_050 Hb_002774_150 Hb_002774_150 Hb_012753_040--Hb_002774_150 Hb_000922_220 Hb_000922_220 Hb_012753_040--Hb_000922_220 Hb_003120_070 Hb_003120_070 Hb_012753_040--Hb_003120_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
417.677 4825.69 305.784 545.758 3434.06 1762.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
46.0891 27.5651 598.35 289.193 2198.8

CAGE analysis