Hb_020273_010

Information

Type -
Description -
Location Contig20273: 12880-15132
Sequence    

Annotation

kegg
ID bvg:104895097
description beta-galactosidase 3
nr
ID XP_012078404.1
description PREDICTED: beta-galactosidase 3 [Jatropha curcas]
swissprot
ID Q10RB4
description Beta-galactosidase 5 OS=Oryza sativa subsp. japonica GN=Os03g0165400 PE=2 SV=1
trembl
ID A0A067KK93
description Beta-galactosidase OS=Jatropha curcas GN=JCGZ_13673 PE=3 SV=1
Gene Ontology
ID GO:0004565
description beta-galactosidase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20736: 12666-13766 , PASA_asmbl_20737: 13930-15236 , PASA_asmbl_20738: 15096-37295 , PASA_asmbl_20740: 14857-21865
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020273_010 0.0 - - PREDICTED: beta-galactosidase 3 [Jatropha curcas]
2 Hb_002217_060 0.1043193934 - - PREDICTED: polygalacturonase At1g48100 [Jatropha curcas]
3 Hb_000205_180 0.1133594972 - - lipoxygenase, putative [Ricinus communis]
4 Hb_012813_020 0.119663319 - - PREDICTED: glucan endo-1,3-beta-glucosidase, basic isoform-like isoform X2 [Jatropha curcas]
5 Hb_001310_060 0.1231631828 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_023771_030 0.1258040256 - - unnamed protein product [Vitis vinifera]
7 Hb_001369_550 0.1302403293 - - 21 kDa protein precursor, putative [Ricinus communis]
8 Hb_002081_060 0.1314994037 - - cyclin d, putative [Ricinus communis]
9 Hb_001284_070 0.1357889224 - - conserved hypothetical protein [Ricinus communis]
10 Hb_009693_010 0.143258926 - - PREDICTED: proline-rich receptor-like protein kinase PERK15 [Gossypium raimondii]
11 Hb_003592_060 0.1433228964 - - hypothetical protein F383_11017 [Gossypium arboreum]
12 Hb_005743_010 0.1441982484 - - RING/U-box superfamily protein, putative [Theobroma cacao]
13 Hb_006916_130 0.1456469035 - - PREDICTED: cytochrome P450 85A [Jatropha curcas]
14 Hb_000343_010 0.1457706633 - - F3F9.11 [Arabidopsis thaliana]
15 Hb_002757_010 0.1465578684 - - hypothetical protein POPTR_0013s10580g [Populus trichocarpa]
16 Hb_000077_300 0.1485752953 - - PREDICTED: expansin-B3-like [Jatropha curcas]
17 Hb_008705_030 0.1506986298 - - hypothetical protein JCGZ_13017 [Jatropha curcas]
18 Hb_004832_010 0.1507227758 - - conserved hypothetical protein [Ricinus communis]
19 Hb_006615_220 0.152880717 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM1 isoform X2 [Jatropha curcas]
20 Hb_002851_070 0.1541988119 - - PREDICTED: uncharacterized protein LOC105646410 [Jatropha curcas]

Gene co-expression network

sample Hb_020273_010 Hb_020273_010 Hb_002217_060 Hb_002217_060 Hb_020273_010--Hb_002217_060 Hb_000205_180 Hb_000205_180 Hb_020273_010--Hb_000205_180 Hb_012813_020 Hb_012813_020 Hb_020273_010--Hb_012813_020 Hb_001310_060 Hb_001310_060 Hb_020273_010--Hb_001310_060 Hb_023771_030 Hb_023771_030 Hb_020273_010--Hb_023771_030 Hb_001369_550 Hb_001369_550 Hb_020273_010--Hb_001369_550 Hb_002217_060--Hb_023771_030 Hb_001284_070 Hb_001284_070 Hb_002217_060--Hb_001284_070 Hb_003592_060 Hb_003592_060 Hb_002217_060--Hb_003592_060 Hb_002217_060--Hb_001310_060 Hb_002851_070 Hb_002851_070 Hb_002217_060--Hb_002851_070 Hb_003626_020 Hb_003626_020 Hb_000205_180--Hb_003626_020 Hb_000205_180--Hb_001369_550 Hb_000205_180--Hb_001310_060 Hb_000205_180--Hb_001284_070 Hb_002757_010 Hb_002757_010 Hb_000205_180--Hb_002757_010 Hb_002700_030 Hb_002700_030 Hb_000205_180--Hb_002700_030 Hb_012813_020--Hb_023771_030 Hb_006916_130 Hb_006916_130 Hb_012813_020--Hb_006916_130 Hb_001369_460 Hb_001369_460 Hb_012813_020--Hb_001369_460 Hb_012813_020--Hb_002217_060 Hb_012813_020--Hb_000205_180 Hb_001310_060--Hb_001284_070 Hb_080147_070 Hb_080147_070 Hb_001310_060--Hb_080147_070 Hb_004607_020 Hb_004607_020 Hb_001310_060--Hb_004607_020 Hb_001310_060--Hb_002700_030 Hb_000077_300 Hb_000077_300 Hb_001310_060--Hb_000077_300 Hb_023771_030--Hb_002851_070 Hb_023771_030--Hb_006916_130 Hb_009693_010 Hb_009693_010 Hb_023771_030--Hb_009693_010 Hb_023771_030--Hb_003592_060 Hb_001369_550--Hb_080147_070 Hb_006316_090 Hb_006316_090 Hb_001369_550--Hb_006316_090 Hb_000260_670 Hb_000260_670 Hb_001369_550--Hb_000260_670 Hb_001369_550--Hb_002700_030 Hb_001369_550--Hb_001284_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.1204 0.125173 7.8737 2.25282 0 0.0541322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.63555 2.26457

CAGE analysis