Hb_020301_020

Information

Type -
Description -
Location Contig20301: 25601-27829
Sequence    

Annotation

kegg
ID rcu:RCOM_0705980
description calmodulin binding protein, putative
nr
ID XP_002516085.1
description calmodulin binding protein, putative [Ricinus communis]
swissprot
ID Q9SF32
description Protein IQ-DOMAIN 1 OS=Arabidopsis thaliana GN=IQD1 PE=1 SV=1
trembl
ID B9RQR6
description Calmodulin binding protein, putative OS=Ricinus communis GN=RCOM_0705980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20837: 25474-27229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020301_020 0.0 - - calmodulin binding protein, putative [Ricinus communis]
2 Hb_000661_150 0.0981358844 - - ubiquitin-conjugating enzyme E2 C, putative [Ricinus communis]
3 Hb_005183_150 0.1033491907 - - PREDICTED: protein CYPRO4 [Jatropha curcas]
4 Hb_001699_270 0.1076731029 - - PREDICTED: uncharacterized protein LOC105628996 [Jatropha curcas]
5 Hb_007632_210 0.1080360247 - - PREDICTED: sodium/potassium/calcium exchanger 1 [Populus euphratica]
6 Hb_000094_230 0.1090780255 - - hypothetical protein JCGZ_04416 [Jatropha curcas]
7 Hb_005542_150 0.1091754812 - - PREDICTED: uncharacterized protein LOC105649178 [Jatropha curcas]
8 Hb_003360_010 0.1112901374 - - Bipolar kinesin KRP-130, putative [Ricinus communis]
9 Hb_003656_080 0.1168985068 - - PREDICTED: corepressor interacting with RBPJ 1-like [Jatropha curcas]
10 Hb_001950_090 0.1179743744 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
11 Hb_124677_050 0.1196495719 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000260_670 0.1198800718 - - PREDICTED: serine/threonine-protein kinase TIO isoform X1 [Jatropha curcas]
13 Hb_005332_030 0.1210550842 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001322_160 0.1232206058 - - hypothetical protein JCGZ_03472 [Jatropha curcas]
15 Hb_003106_090 0.1238038429 transcription factor TF Family: E2F-DP E2F, putative [Ricinus communis]
16 Hb_006588_100 0.1242589628 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001263_030 0.1242964884 - - PREDICTED: uncharacterized protein At3g28850-like [Jatropha curcas]
18 Hb_000345_450 0.1246524006 - - PREDICTED: microtubule-binding protein TANGLED [Jatropha curcas]
19 Hb_004531_060 0.1251539327 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 3 [Jatropha curcas]
20 Hb_005276_090 0.1262452185 - - PREDICTED: uncharacterized protein LOC105649997 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_020301_020 Hb_020301_020 Hb_000661_150 Hb_000661_150 Hb_020301_020--Hb_000661_150 Hb_005183_150 Hb_005183_150 Hb_020301_020--Hb_005183_150 Hb_001699_270 Hb_001699_270 Hb_020301_020--Hb_001699_270 Hb_007632_210 Hb_007632_210 Hb_020301_020--Hb_007632_210 Hb_000094_230 Hb_000094_230 Hb_020301_020--Hb_000094_230 Hb_005542_150 Hb_005542_150 Hb_020301_020--Hb_005542_150 Hb_000661_150--Hb_001699_270 Hb_101133_050 Hb_101133_050 Hb_000661_150--Hb_101133_050 Hb_001950_090 Hb_001950_090 Hb_000661_150--Hb_001950_090 Hb_001688_100 Hb_001688_100 Hb_000661_150--Hb_001688_100 Hb_000418_040 Hb_000418_040 Hb_000661_150--Hb_000418_040 Hb_001307_150 Hb_001307_150 Hb_000661_150--Hb_001307_150 Hb_005183_150--Hb_007632_210 Hb_033041_010 Hb_033041_010 Hb_005183_150--Hb_033041_010 Hb_003360_010 Hb_003360_010 Hb_005183_150--Hb_003360_010 Hb_001524_120 Hb_001524_120 Hb_005183_150--Hb_001524_120 Hb_007632_080 Hb_007632_080 Hb_005183_150--Hb_007632_080 Hb_124677_050 Hb_124677_050 Hb_005183_150--Hb_124677_050 Hb_001699_270--Hb_001307_150 Hb_000480_060 Hb_000480_060 Hb_001699_270--Hb_000480_060 Hb_001699_270--Hb_001950_090 Hb_003847_060 Hb_003847_060 Hb_001699_270--Hb_003847_060 Hb_000345_450 Hb_000345_450 Hb_001699_270--Hb_000345_450 Hb_007632_210--Hb_124677_050 Hb_007632_210--Hb_000661_150 Hb_002311_090 Hb_002311_090 Hb_007632_210--Hb_002311_090 Hb_003228_050 Hb_003228_050 Hb_007632_210--Hb_003228_050 Hb_007632_210--Hb_101133_050 Hb_000979_070 Hb_000979_070 Hb_000094_230--Hb_000979_070 Hb_000535_040 Hb_000535_040 Hb_000094_230--Hb_000535_040 Hb_020025_030 Hb_020025_030 Hb_000094_230--Hb_020025_030 Hb_000140_200 Hb_000140_200 Hb_000094_230--Hb_000140_200 Hb_001263_030 Hb_001263_030 Hb_000094_230--Hb_001263_030 Hb_004531_060 Hb_004531_060 Hb_000094_230--Hb_004531_060 Hb_003106_090 Hb_003106_090 Hb_005542_150--Hb_003106_090 Hb_001999_160 Hb_001999_160 Hb_005542_150--Hb_001999_160 Hb_005542_150--Hb_000345_450 Hb_005542_150--Hb_033041_010 Hb_000085_360 Hb_000085_360 Hb_005542_150--Hb_000085_360 Hb_005542_150--Hb_101133_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.09416 0.25011 7.5436 5.22988 0 0.0880897
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.110951 0.0654693 0.0411545 1.88775 0.366731

CAGE analysis