Hb_020301_040

Information

Type -
Description -
Location Contig20301: 35434-40997
Sequence    

Annotation

kegg
ID rcu:RCOM_0706000
description Grave disease carrier protein, putative
nr
ID XP_012077256.1
description PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
swissprot
ID P16260
description Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=1 SV=3
trembl
ID A0A067KP62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07651 PE=3 SV=1
Gene Ontology
ID GO:0005743
description mitochondrial substrate carrier family protein p

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20839: 35568-40946
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020301_040 0.0 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
2 Hb_002876_120 0.0698403138 - - PREDICTED: protein-tyrosine-phosphatase PTP1 isoform X1 [Jatropha curcas]
3 Hb_003579_030 0.0827684478 - - phosphatase 2C family protein [Populus trichocarpa]
4 Hb_000975_300 0.0856219581 - - Rab2 [Hevea brasiliensis]
5 Hb_007594_120 0.0867926985 transcription factor TF Family: MIKC MADS-box transcription factor 2 [Hevea brasiliensis]
6 Hb_004375_140 0.0894880083 - - PREDICTED: nicotinamide adenine dinucleotide transporter 1, chloroplastic [Jatropha curcas]
7 Hb_021409_030 0.1004699369 - - PREDICTED: serine/threonine-protein kinase WNK8 isoform X3 [Jatropha curcas]
8 Hb_012505_010 0.1032434811 - - mak, putative [Ricinus communis]
9 Hb_003581_260 0.1034310263 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
10 Hb_000802_100 0.1044519413 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
11 Hb_003504_020 0.1067127934 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
12 Hb_001616_030 0.1073716387 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
13 Hb_007382_150 0.1085832117 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
14 Hb_000062_340 0.1086828901 - - PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Jatropha curcas]
15 Hb_002999_050 0.110133362 - - 50S ribosomal protein L18, chloroplast precursor, putative [Ricinus communis]
16 Hb_000377_060 0.1108877854 - - ARF GTPase activator, putative [Ricinus communis]
17 Hb_003376_030 0.11156258 - - PREDICTED: ribonuclease P protein subunit p29 isoform X2 [Jatropha curcas]
18 Hb_002097_060 0.1120671278 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000230_380 0.1122588433 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
20 Hb_024714_060 0.1130790697 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020301_040 Hb_020301_040 Hb_002876_120 Hb_002876_120 Hb_020301_040--Hb_002876_120 Hb_003579_030 Hb_003579_030 Hb_020301_040--Hb_003579_030 Hb_000975_300 Hb_000975_300 Hb_020301_040--Hb_000975_300 Hb_007594_120 Hb_007594_120 Hb_020301_040--Hb_007594_120 Hb_004375_140 Hb_004375_140 Hb_020301_040--Hb_004375_140 Hb_021409_030 Hb_021409_030 Hb_020301_040--Hb_021409_030 Hb_002876_120--Hb_007594_120 Hb_002876_120--Hb_003579_030 Hb_001157_010 Hb_001157_010 Hb_002876_120--Hb_001157_010 Hb_000012_100 Hb_000012_100 Hb_002876_120--Hb_000012_100 Hb_002999_050 Hb_002999_050 Hb_002876_120--Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_001616_030 Hb_001616_030 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_000062_340 Hb_000062_340 Hb_000975_300--Hb_000062_340 Hb_000975_300--Hb_007594_120 Hb_000963_180 Hb_000963_180 Hb_000975_300--Hb_000963_180 Hb_002182_030 Hb_002182_030 Hb_000975_300--Hb_002182_030 Hb_000975_300--Hb_002876_120 Hb_000069_550 Hb_000069_550 Hb_007594_120--Hb_000069_550 Hb_007594_120--Hb_000062_340 Hb_024714_060 Hb_024714_060 Hb_007594_120--Hb_024714_060 Hb_004375_140--Hb_021409_030 Hb_000103_010 Hb_000103_010 Hb_004375_140--Hb_000103_010 Hb_001085_120 Hb_001085_120 Hb_004375_140--Hb_001085_120 Hb_129204_030 Hb_129204_030 Hb_004375_140--Hb_129204_030 Hb_004586_320 Hb_004586_320 Hb_004375_140--Hb_004586_320 Hb_000608_370 Hb_000608_370 Hb_004375_140--Hb_000608_370 Hb_021409_030--Hb_129204_030 Hb_138585_060 Hb_138585_060 Hb_021409_030--Hb_138585_060 Hb_021409_030--Hb_000608_370 Hb_000240_090 Hb_000240_090 Hb_021409_030--Hb_000240_090 Hb_012753_160 Hb_012753_160 Hb_021409_030--Hb_012753_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.5468 9.91448 21.6503 12.8488 19.0484 24.3961
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
52.8469 88.0581 89.8886 12.5857 9.47721

CAGE analysis