Hb_020314_010

Information

Type -
Description -
Location Contig20314: 856-1742
Sequence    

Annotation

kegg
ID rcu:RCOM_0333710
description Protein C14orf21, putative
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020314_010 0.0 - - -
2 Hb_032660_020 0.2306098645 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
3 Hb_012799_020 0.2335164168 - - metal ion binding protein, putative [Ricinus communis]
4 Hb_128524_010 0.2336706508 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
5 Hb_028285_030 0.2386173654 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
6 Hb_006745_060 0.2420566823 - - -
7 Hb_004917_050 0.2432783992 - - -
8 Hb_002245_040 0.2486699887 - - thioredoxin h [Hevea brasiliensis]
9 Hb_000453_300 0.2524185358 - - latex cystatin [Hevea brasiliensis]
10 Hb_000067_020 0.2553969234 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
11 Hb_000387_060 0.2561031357 - - -
12 Hb_107504_010 0.2570677673 - - -
13 Hb_002918_040 0.2595635456 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
14 Hb_000258_100 0.2602370756 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004635_060 0.2647629602 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
16 Hb_135585_010 0.2684450807 - - -
17 Hb_001425_110 0.2711667685 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
18 Hb_002780_050 0.2753585901 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
19 Hb_000270_150 0.2809326971 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
20 Hb_009467_030 0.2827718103 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Jatropha curcas]

Gene co-expression network

sample Hb_020314_010 Hb_020314_010 Hb_032660_020 Hb_032660_020 Hb_020314_010--Hb_032660_020 Hb_012799_020 Hb_012799_020 Hb_020314_010--Hb_012799_020 Hb_128524_010 Hb_128524_010 Hb_020314_010--Hb_128524_010 Hb_028285_030 Hb_028285_030 Hb_020314_010--Hb_028285_030 Hb_006745_060 Hb_006745_060 Hb_020314_010--Hb_006745_060 Hb_004917_050 Hb_004917_050 Hb_020314_010--Hb_004917_050 Hb_000387_060 Hb_000387_060 Hb_032660_020--Hb_000387_060 Hb_000714_010 Hb_000714_010 Hb_032660_020--Hb_000714_010 Hb_003592_070 Hb_003592_070 Hb_032660_020--Hb_003592_070 Hb_001101_010 Hb_001101_010 Hb_032660_020--Hb_001101_010 Hb_002918_300 Hb_002918_300 Hb_032660_020--Hb_002918_300 Hb_003050_070 Hb_003050_070 Hb_032660_020--Hb_003050_070 Hb_000453_300 Hb_000453_300 Hb_012799_020--Hb_000453_300 Hb_107504_010 Hb_107504_010 Hb_012799_020--Hb_107504_010 Hb_001936_140 Hb_001936_140 Hb_012799_020--Hb_001936_140 Hb_002918_040 Hb_002918_040 Hb_012799_020--Hb_002918_040 Hb_004209_030 Hb_004209_030 Hb_012799_020--Hb_004209_030 Hb_000792_120 Hb_000792_120 Hb_012799_020--Hb_000792_120 Hb_128524_010--Hb_028285_030 Hb_002245_040 Hb_002245_040 Hb_128524_010--Hb_002245_040 Hb_128524_010--Hb_000792_120 Hb_135585_010 Hb_135585_010 Hb_128524_010--Hb_135585_010 Hb_053373_010 Hb_053373_010 Hb_128524_010--Hb_053373_010 Hb_128524_010--Hb_000453_300 Hb_028285_030--Hb_002245_040 Hb_000120_360 Hb_000120_360 Hb_028285_030--Hb_000120_360 Hb_028285_030--Hb_000453_300 Hb_028285_030--Hb_000387_060 Hb_028285_030--Hb_003050_070 Hb_005539_210 Hb_005539_210 Hb_006745_060--Hb_005539_210 Hb_004635_060 Hb_004635_060 Hb_006745_060--Hb_004635_060 Hb_002492_020 Hb_002492_020 Hb_006745_060--Hb_002492_020 Hb_000300_400 Hb_000300_400 Hb_006745_060--Hb_000300_400 Hb_001959_260 Hb_001959_260 Hb_006745_060--Hb_001959_260 Hb_010166_020 Hb_010166_020 Hb_006745_060--Hb_010166_020 Hb_009467_030 Hb_009467_030 Hb_004917_050--Hb_009467_030 Hb_000008_260 Hb_000008_260 Hb_004917_050--Hb_000008_260 Hb_000979_050 Hb_000979_050 Hb_004917_050--Hb_000979_050 Hb_102438_010 Hb_102438_010 Hb_004917_050--Hb_102438_010 Hb_001386_080 Hb_001386_080 Hb_004917_050--Hb_001386_080 Hb_008092_140 Hb_008092_140 Hb_004917_050--Hb_008092_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0447878 0 0 0 0.126231 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66515 0.981458 0.142611 0.100747 0.157758

CAGE analysis