Hb_020334_010

Information

Type -
Description -
Location Contig20334: 15-1010
Sequence    

Annotation

kegg
ID pda:103700405
description uncharacterized LOC103700405
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020334_010 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_026239_010 0.0979492557 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_011484_010 0.1880907697 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_001357_010 0.2195939702 - - -
5 Hb_069251_010 0.2206031539 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_029510_040 0.2285526734 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
7 Hb_061802_010 0.229947293 - - hypothetical protein VITISV_011986 [Vitis vinifera]
8 Hb_001780_120 0.2300879291 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
9 Hb_001294_010 0.2367978508 - - PREDICTED: E3 ubiquitin-protein ligase RNF170-like [Jatropha curcas]
10 Hb_165071_030 0.2454797026 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_000399_010 0.2487331726 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
12 Hb_004734_050 0.249759709 - - -
13 Hb_000432_050 0.2576271135 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
14 Hb_000329_180 0.2579898595 - - Auxin-induced protein X10A, putative [Ricinus communis]
15 Hb_000836_130 0.2598435975 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
16 Hb_000772_040 0.259937353 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
17 Hb_000052_020 0.2602406288 desease resistance Gene Name: ABC_tran PREDICTED: LOW QUALITY PROTEIN: ABC transporter G family member 2-like [Jatropha curcas]
18 Hb_000963_140 0.2637689132 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_001006_260 0.2638479828 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
20 Hb_000853_410 0.264175278 - - -

Gene co-expression network

sample Hb_020334_010 Hb_020334_010 Hb_026239_010 Hb_026239_010 Hb_020334_010--Hb_026239_010 Hb_011484_010 Hb_011484_010 Hb_020334_010--Hb_011484_010 Hb_001357_010 Hb_001357_010 Hb_020334_010--Hb_001357_010 Hb_069251_010 Hb_069251_010 Hb_020334_010--Hb_069251_010 Hb_029510_040 Hb_029510_040 Hb_020334_010--Hb_029510_040 Hb_061802_010 Hb_061802_010 Hb_020334_010--Hb_061802_010 Hb_026239_010--Hb_011484_010 Hb_026239_010--Hb_061802_010 Hb_026239_010--Hb_001357_010 Hb_000046_160 Hb_000046_160 Hb_026239_010--Hb_000046_160 Hb_001294_010 Hb_001294_010 Hb_026239_010--Hb_001294_010 Hb_000399_010 Hb_000399_010 Hb_011484_010--Hb_000399_010 Hb_006132_030 Hb_006132_030 Hb_011484_010--Hb_006132_030 Hb_000853_410 Hb_000853_410 Hb_011484_010--Hb_000853_410 Hb_011484_010--Hb_061802_010 Hb_001357_010--Hb_001294_010 Hb_001189_050 Hb_001189_050 Hb_001357_010--Hb_001189_050 Hb_092107_010 Hb_092107_010 Hb_001357_010--Hb_092107_010 Hb_011030_020 Hb_011030_020 Hb_001357_010--Hb_011030_020 Hb_005162_070 Hb_005162_070 Hb_001357_010--Hb_005162_070 Hb_001357_010--Hb_029510_040 Hb_001780_120 Hb_001780_120 Hb_069251_010--Hb_001780_120 Hb_010080_080 Hb_010080_080 Hb_069251_010--Hb_010080_080 Hb_003294_100 Hb_003294_100 Hb_069251_010--Hb_003294_100 Hb_069251_010--Hb_029510_040 Hb_069251_010--Hb_001357_010 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_029510_040--Hb_001189_050 Hb_012799_100 Hb_012799_100 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_000210_220 Hb_000210_220 Hb_061802_010--Hb_000210_220 Hb_000329_180 Hb_000329_180 Hb_061802_010--Hb_000329_180 Hb_001575_020 Hb_001575_020 Hb_061802_010--Hb_001575_020 Hb_071947_010 Hb_071947_010 Hb_061802_010--Hb_071947_010 Hb_005505_020 Hb_005505_020 Hb_061802_010--Hb_005505_020 Hb_000061_300 Hb_000061_300 Hb_061802_010--Hb_000061_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.136435 0.0456768 0 0 0 0.160861
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.438917 0.394451 0.806668 0.179284 0.39803

CAGE analysis