Hb_020375_010

Information

Type -
Description -
Location Contig20375: 13599-14057
Sequence    

Annotation

kegg
ID rcu:RCOM_2037040
description transcription factor, putative
nr
ID XP_012066261.1
description PREDICTED: transcription factor IBH1 [Jatropha curcas]
swissprot
ID Q9SKX1
description Transcription factor IBH1 OS=Arabidopsis thaliana GN=IBH1 PE=1 SV=1
trembl
ID A0A067L347
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23828 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20862: 13487-14080
cDNA
(Sanger)
(ID:Location)		 005_P21.ab1: 13588-14080 , 016_C24.ab1: 13588-14080

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020375_010 0.0 - - PREDICTED: transcription factor IBH1 [Jatropha curcas]
2 Hb_000077_250 0.0830787855 - - hypothetical protein JCGZ_25802 [Jatropha curcas]
3 Hb_000000_050 0.0832064654 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000813_070 0.0851199108 - - conserved hypothetical protein [Ricinus communis]
5 Hb_009522_010 0.0857390422 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
6 Hb_004787_120 0.0858283805 - - PREDICTED: transcription factor TCP14 [Jatropha curcas]
7 Hb_000620_040 0.0860583952 transcription factor TF Family: G2-like transcription factor, putative [Ricinus communis]
8 Hb_004650_120 0.0873634352 - - PREDICTED: auxin transporter-like protein 3 [Jatropha curcas]
9 Hb_003032_030 0.0892748624 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
10 Hb_005711_030 0.0900026509 - - hypothetical protein RCOM_0460020 [Ricinus communis]
11 Hb_009620_110 0.091266562 - - -
12 Hb_002151_070 0.0931331931 - - PREDICTED: inactive protein RESTRICTED TEV MOVEMENT 2-like [Jatropha curcas]
13 Hb_002073_270 0.0932603237 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
14 Hb_133974_010 0.0941836342 - - PREDICTED: glucan endo-1,3-beta-glucosidase 3-like isoform X2 [Populus euphratica]
15 Hb_009023_010 0.0957991461 - - glycosyl hydrolase family 31 family protein [Populus trichocarpa]
16 Hb_015934_090 0.0960811576 - - PREDICTED: uncharacterized protein LOC105640158 [Jatropha curcas]
17 Hb_001512_130 0.1008417515 - - PREDICTED: uncharacterized protein LOC105633633 [Jatropha curcas]
18 Hb_000749_300 0.1029584812 - - PREDICTED: uncharacterized protein LOC105129180 [Populus euphratica]
19 Hb_001279_400 0.1044319524 - - PREDICTED: uncharacterized protein LOC105633544 [Jatropha curcas]
20 Hb_147006_010 0.1047117366 - - receptor like protein 35 [Arabidopsis thaliana]

Gene co-expression network

sample Hb_020375_010 Hb_020375_010 Hb_000077_250 Hb_000077_250 Hb_020375_010--Hb_000077_250 Hb_000000_050 Hb_000000_050 Hb_020375_010--Hb_000000_050 Hb_000813_070 Hb_000813_070 Hb_020375_010--Hb_000813_070 Hb_009522_010 Hb_009522_010 Hb_020375_010--Hb_009522_010 Hb_004787_120 Hb_004787_120 Hb_020375_010--Hb_004787_120 Hb_000620_040 Hb_000620_040 Hb_020375_010--Hb_000620_040 Hb_002997_150 Hb_002997_150 Hb_000077_250--Hb_002997_150 Hb_004650_120 Hb_004650_120 Hb_000077_250--Hb_004650_120 Hb_007185_050 Hb_007185_050 Hb_000077_250--Hb_007185_050 Hb_004020_030 Hb_004020_030 Hb_000077_250--Hb_004020_030 Hb_009070_020 Hb_009070_020 Hb_000077_250--Hb_009070_020 Hb_002894_080 Hb_002894_080 Hb_000000_050--Hb_002894_080 Hb_001279_400 Hb_001279_400 Hb_000000_050--Hb_001279_400 Hb_000000_050--Hb_000620_040 Hb_015934_090 Hb_015934_090 Hb_000000_050--Hb_015934_090 Hb_003032_030 Hb_003032_030 Hb_000000_050--Hb_003032_030 Hb_005711_030 Hb_005711_030 Hb_000813_070--Hb_005711_030 Hb_002151_070 Hb_002151_070 Hb_000813_070--Hb_002151_070 Hb_001289_070 Hb_001289_070 Hb_000813_070--Hb_001289_070 Hb_000813_070--Hb_001279_400 Hb_001688_050 Hb_001688_050 Hb_000813_070--Hb_001688_050 Hb_009620_110 Hb_009620_110 Hb_009522_010--Hb_009620_110 Hb_002073_270 Hb_002073_270 Hb_009522_010--Hb_002073_270 Hb_185726_010 Hb_185726_010 Hb_009522_010--Hb_185726_010 Hb_009522_010--Hb_009070_020 Hb_147006_010 Hb_147006_010 Hb_009522_010--Hb_147006_010 Hb_004787_120--Hb_000813_070 Hb_000358_090 Hb_000358_090 Hb_004787_120--Hb_000358_090 Hb_001514_050 Hb_001514_050 Hb_004787_120--Hb_001514_050 Hb_004787_120--Hb_002151_070 Hb_004787_120--Hb_000000_050 Hb_000620_040--Hb_003032_030 Hb_000620_040--Hb_147006_010 Hb_000620_040--Hb_015934_090 Hb_003893_130 Hb_003893_130 Hb_000620_040--Hb_003893_130 Hb_010164_030 Hb_010164_030 Hb_000620_040--Hb_010164_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.348642 7.13851 13.9541 53.3282 0.310349 0.462142
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.459862 36.5787

CAGE analysis