Hb_020378_020

Information

Type -
Description -
Location Contig20378: 14419-15879
Sequence    

Annotation

kegg
ID rcu:RCOM_1185020
description Protein kinase APK1B, chloroplast precursor, putative (EC:2.7.11.30)
nr
ID XP_002527952.1
description Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
swissprot
ID Q9SV05
description Serine/threonine-protein kinase-like protein At3g51990 OS=Arabidopsis thaliana GN=At3g51990 PE=2 SV=1
trembl
ID B9SPN3
description Protein kinase APK1B, chloroplast, putative OS=Ricinus communis GN=RCOM_1185020 PE=3 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein at3g51990

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020378_020 0.0 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
2 Hb_114917_010 0.1147366927 - - PREDICTED: thylakoid lumenal 19 kDa protein, chloroplastic [Jatropha curcas]
3 Hb_003006_090 0.1205594077 - - PREDICTED: cellulose synthase A catalytic subunit 2 [UDP-forming] isoform X2 [Jatropha curcas]
4 Hb_028396_020 0.1206547298 - - PREDICTED: ras-related protein Rab7 [Jatropha curcas]
5 Hb_006750_010 0.1234956962 - - Beta-1,3-galactosyltransferase sqv-2, putative [Ricinus communis]
6 Hb_004241_110 0.1235301036 - - Minor allergen Alt a, putative [Ricinus communis]
7 Hb_001008_080 0.1276255359 - - PREDICTED: acyl-protein thioesterase 2 [Jatropha curcas]
8 Hb_000227_280 0.1284333173 - - PREDICTED: putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14440 [Jatropha curcas]
9 Hb_007894_070 0.1298001684 - - PREDICTED: uncharacterized protein LOC105632955 [Jatropha curcas]
10 Hb_003097_220 0.131760316 - - hypothetical protein POPTR_0001s06150g [Populus trichocarpa]
11 Hb_002495_030 0.1359884237 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]
12 Hb_002613_040 0.136126047 - - phosphate translocator-related family protein [Populus trichocarpa]
13 Hb_002685_220 0.1370164196 - - PREDICTED: cationic amino acid transporter 4, vacuolar-like isoform X1 [Jatropha curcas]
14 Hb_001916_150 0.1378197006 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Vitis vinifera]
15 Hb_003001_130 0.1378946952 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000659_040 0.1394449366 - - PREDICTED: plasma membrane ATPase 2-like isoform X1 [Jatropha curcas]
17 Hb_010222_040 0.1394567054 - - PREDICTED: kinesin-2 [Jatropha curcas]
18 Hb_001486_100 0.1412381262 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_006414_010 0.1428161611 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
20 Hb_001677_040 0.1446167168 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_020378_020 Hb_020378_020 Hb_114917_010 Hb_114917_010 Hb_020378_020--Hb_114917_010 Hb_003006_090 Hb_003006_090 Hb_020378_020--Hb_003006_090 Hb_028396_020 Hb_028396_020 Hb_020378_020--Hb_028396_020 Hb_006750_010 Hb_006750_010 Hb_020378_020--Hb_006750_010 Hb_004241_110 Hb_004241_110 Hb_020378_020--Hb_004241_110 Hb_001008_080 Hb_001008_080 Hb_020378_020--Hb_001008_080 Hb_002613_040 Hb_002613_040 Hb_114917_010--Hb_002613_040 Hb_003097_220 Hb_003097_220 Hb_114917_010--Hb_003097_220 Hb_003058_170 Hb_003058_170 Hb_114917_010--Hb_003058_170 Hb_114917_010--Hb_028396_020 Hb_001916_150 Hb_001916_150 Hb_114917_010--Hb_001916_150 Hb_000271_220 Hb_000271_220 Hb_003006_090--Hb_000271_220 Hb_002542_060 Hb_002542_060 Hb_003006_090--Hb_002542_060 Hb_003462_040 Hb_003462_040 Hb_003006_090--Hb_003462_040 Hb_001195_660 Hb_001195_660 Hb_003006_090--Hb_001195_660 Hb_001677_040 Hb_001677_040 Hb_003006_090--Hb_001677_040 Hb_000603_020 Hb_000603_020 Hb_003006_090--Hb_000603_020 Hb_028396_020--Hb_006750_010 Hb_034168_050 Hb_034168_050 Hb_028396_020--Hb_034168_050 Hb_010222_040 Hb_010222_040 Hb_028396_020--Hb_010222_040 Hb_028396_020--Hb_001677_040 Hb_006750_010--Hb_003462_040 Hb_001369_010 Hb_001369_010 Hb_006750_010--Hb_001369_010 Hb_000820_110 Hb_000820_110 Hb_006750_010--Hb_000820_110 Hb_001195_380 Hb_001195_380 Hb_006750_010--Hb_001195_380 Hb_019516_060 Hb_019516_060 Hb_006750_010--Hb_019516_060 Hb_084147_010 Hb_084147_010 Hb_004241_110--Hb_084147_010 Hb_012395_110 Hb_012395_110 Hb_004241_110--Hb_012395_110 Hb_003001_130 Hb_003001_130 Hb_004241_110--Hb_003001_130 Hb_007894_070 Hb_007894_070 Hb_004241_110--Hb_007894_070 Hb_000227_280 Hb_000227_280 Hb_004241_110--Hb_000227_280 Hb_001318_100 Hb_001318_100 Hb_004241_110--Hb_001318_100 Hb_002495_030 Hb_002495_030 Hb_001008_080--Hb_002495_030 Hb_000003_580 Hb_000003_580 Hb_001008_080--Hb_000003_580 Hb_001008_080--Hb_006750_010 Hb_001008_080--Hb_001195_380 Hb_003086_030 Hb_003086_030 Hb_001008_080--Hb_003086_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4316 11.3703 11.9719 31.535 0.0803119 1.48156
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.86717 1.8235 1.18836 6.78584 30.1672

CAGE analysis