Hb_020378_030

Information

Type -
Description -
Location Contig20378: 19953-33710
Sequence    

Annotation

kegg
ID pop:POPTR_0009s06020g
description POPTRDRAFT_821436; transducin family protein
nr
ID XP_012065636.1
description PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
swissprot
ID Q8L611
description Protein transport protein SEC31 homolog B OS=Arabidopsis thaliana GN=SEC31B PE=1 SV=1
trembl
ID A0A067LGB8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16897 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_20864: 19886-22508 , PASA_asmbl_20867: 24606-27952 , PASA_asmbl_20868: 26211-26573 , PASA_asmbl_20869: 28352-28733 , PASA_asmbl_20870: 28734-33583
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020378_030 0.0 - - PREDICTED: protein transport protein SEC31 homolog B [Jatropha curcas]
2 Hb_004586_220 0.0370157894 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]
3 Hb_000590_050 0.0477911507 - - PREDICTED: protein-tyrosine-phosphatase MKP1 [Jatropha curcas]
4 Hb_000441_220 0.0490381017 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_001814_030 0.0532155375 - - PREDICTED: uncharacterized protein LOC105650634 [Jatropha curcas]
6 Hb_000592_030 0.0544560042 - - PREDICTED: uncharacterized protein LOC100853969 isoform X1 [Vitis vinifera]
7 Hb_002732_040 0.0547598984 - - PREDICTED: uncharacterized protein LOC105628163 isoform X1 [Jatropha curcas]
8 Hb_000537_050 0.0571476212 - - AP-2 complex subunit beta-1, putative [Ricinus communis]
9 Hb_007747_040 0.0597433063 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SPINDLY [Jatropha curcas]
10 Hb_000327_270 0.0601732828 - - PREDICTED: leukocyte receptor cluster member 8 homolog isoform X1 [Jatropha curcas]
11 Hb_002205_250 0.0606233794 - - PREDICTED: probable inactive serine/threonine-protein kinase scy1 isoform X1 [Jatropha curcas]
12 Hb_000890_060 0.0606888194 - - PREDICTED: sucrose nonfermenting 4-like protein [Jatropha curcas]
13 Hb_000170_090 0.0615994248 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
14 Hb_105328_020 0.0622440926 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN [Jatropha curcas]
15 Hb_000462_060 0.0624218855 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105642316 isoform X2 [Jatropha curcas]
16 Hb_007426_110 0.0638490803 - - PREDICTED: vacuolar fusion protein CCZ1 homolog isoform X2 [Jatropha curcas]
17 Hb_001655_030 0.0647710618 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X2 [Jatropha curcas]
18 Hb_000138_100 0.0649136952 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
19 Hb_009270_020 0.0663202872 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
20 Hb_000789_250 0.0673129593 - - PREDICTED: uncharacterized protein LOC105637809 [Jatropha curcas]

Gene co-expression network

sample Hb_020378_030 Hb_020378_030 Hb_004586_220 Hb_004586_220 Hb_020378_030--Hb_004586_220 Hb_000590_050 Hb_000590_050 Hb_020378_030--Hb_000590_050 Hb_000441_220 Hb_000441_220 Hb_020378_030--Hb_000441_220 Hb_001814_030 Hb_001814_030 Hb_020378_030--Hb_001814_030 Hb_000592_030 Hb_000592_030 Hb_020378_030--Hb_000592_030 Hb_002732_040 Hb_002732_040 Hb_020378_030--Hb_002732_040 Hb_004586_220--Hb_001814_030 Hb_000537_050 Hb_000537_050 Hb_004586_220--Hb_000537_050 Hb_000170_090 Hb_000170_090 Hb_004586_220--Hb_000170_090 Hb_000138_100 Hb_000138_100 Hb_004586_220--Hb_000138_100 Hb_004586_220--Hb_000441_220 Hb_000327_270 Hb_000327_270 Hb_000590_050--Hb_000327_270 Hb_000890_060 Hb_000890_060 Hb_000590_050--Hb_000890_060 Hb_009270_020 Hb_009270_020 Hb_000590_050--Hb_009270_020 Hb_000590_050--Hb_000592_030 Hb_001004_060 Hb_001004_060 Hb_000590_050--Hb_001004_060 Hb_012506_030 Hb_012506_030 Hb_000441_220--Hb_012506_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120 Hb_002205_250 Hb_002205_250 Hb_001814_030--Hb_002205_250 Hb_000614_210 Hb_000614_210 Hb_001814_030--Hb_000614_210 Hb_012395_140 Hb_012395_140 Hb_001814_030--Hb_012395_140 Hb_159558_010 Hb_159558_010 Hb_001814_030--Hb_159558_010 Hb_000613_050 Hb_000613_050 Hb_000592_030--Hb_000613_050 Hb_002815_030 Hb_002815_030 Hb_000592_030--Hb_002815_030 Hb_000592_030--Hb_000537_050 Hb_001343_040 Hb_001343_040 Hb_000592_030--Hb_001343_040 Hb_001473_180 Hb_001473_180 Hb_000592_030--Hb_001473_180 Hb_000343_250 Hb_000343_250 Hb_002732_040--Hb_000343_250 Hb_007747_040 Hb_007747_040 Hb_002732_040--Hb_007747_040 Hb_000462_060 Hb_000462_060 Hb_002732_040--Hb_000462_060 Hb_000866_460 Hb_000866_460 Hb_002732_040--Hb_000866_460 Hb_002732_040--Hb_000327_270
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
17.6026 22.9246 20.6048 21.5859 20.2103 26.2872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.6533 12.5608 22.0219 26.0074 24.0156

CAGE analysis