Hb_020469_010

Information

Type -
Description -
Location Contig20469: 2208-2581
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020469_010 0.0 - - -
2 Hb_184746_010 0.2876424263 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
3 Hb_041813_070 0.3054564109 - - -
4 Hb_004143_030 0.3081304088 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
5 Hb_126395_010 0.3202631603 - - hypothetical protein VITISV_043980 [Vitis vinifera]
6 Hb_115031_030 0.3299153062 - - ribosomal protein S12 (chloroplast) [Camellia sinensis]
7 Hb_004542_020 0.3440479349 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
8 Hb_037281_010 0.3467202292 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_000219_070 0.350397098 - - -
10 Hb_010931_060 0.3714367432 - - hypothetical protein JCGZ_03001 [Jatropha curcas]
11 Hb_001439_030 0.3733702021 - - -
12 Hb_001706_030 0.3744827113 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
13 Hb_000493_020 0.374830916 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
14 Hb_000603_270 0.3749603178 - - PREDICTED: uncharacterized protein LOC105638080 [Jatropha curcas]
15 Hb_006920_050 0.3818717087 - - endo-1,4-beta-glucanase [Vigna radiata var. radiata]
16 Hb_000088_150 0.381993303 - - hypothetical protein POPTR_0013s11250g [Populus trichocarpa]
17 Hb_007504_030 0.3902041814 - - Rpl14, partial (chloroplast) [Schistostemon retusum]
18 Hb_004176_060 0.3918796113 - - -
19 Hb_001965_020 0.4002748428 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
20 Hb_002685_120 0.4031158428 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020469_010 Hb_020469_010 Hb_184746_010 Hb_184746_010 Hb_020469_010--Hb_184746_010 Hb_041813_070 Hb_041813_070 Hb_020469_010--Hb_041813_070 Hb_004143_030 Hb_004143_030 Hb_020469_010--Hb_004143_030 Hb_126395_010 Hb_126395_010 Hb_020469_010--Hb_126395_010 Hb_115031_030 Hb_115031_030 Hb_020469_010--Hb_115031_030 Hb_004542_020 Hb_004542_020 Hb_020469_010--Hb_004542_020 Hb_078901_020 Hb_078901_020 Hb_184746_010--Hb_078901_020 Hb_001303_070 Hb_001303_070 Hb_184746_010--Hb_001303_070 Hb_183574_010 Hb_183574_010 Hb_184746_010--Hb_183574_010 Hb_004449_240 Hb_004449_240 Hb_184746_010--Hb_004449_240 Hb_062741_010 Hb_062741_010 Hb_184746_010--Hb_062741_010 Hb_006995_020 Hb_006995_020 Hb_041813_070--Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_041813_070--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_041813_070--Hb_007044_280 Hb_001969_050 Hb_001969_050 Hb_041813_070--Hb_001969_050 Hb_144552_010 Hb_144552_010 Hb_041813_070--Hb_144552_010 Hb_000049_220 Hb_000049_220 Hb_004143_030--Hb_000049_220 Hb_027380_240 Hb_027380_240 Hb_004143_030--Hb_027380_240 Hb_007504_030 Hb_007504_030 Hb_004143_030--Hb_007504_030 Hb_007317_170 Hb_007317_170 Hb_004143_030--Hb_007317_170 Hb_000603_270 Hb_000603_270 Hb_004143_030--Hb_000603_270 Hb_004738_060 Hb_004738_060 Hb_004143_030--Hb_004738_060 Hb_002248_040 Hb_002248_040 Hb_126395_010--Hb_002248_040 Hb_126395_010--Hb_115031_030 Hb_003388_070 Hb_003388_070 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_007595_060 Hb_007595_060 Hb_126395_010--Hb_007595_060 Hb_001706_030 Hb_001706_030 Hb_126395_010--Hb_001706_030 Hb_145745_040 Hb_145745_040 Hb_115031_030--Hb_145745_040 Hb_115031_030--Hb_002248_040 Hb_000331_050 Hb_000331_050 Hb_115031_030--Hb_000331_050 Hb_000088_150 Hb_000088_150 Hb_115031_030--Hb_000088_150 Hb_115031_030--Hb_003388_070 Hb_015531_030 Hb_015531_030 Hb_004542_020--Hb_015531_030 Hb_143629_060 Hb_143629_060 Hb_004542_020--Hb_143629_060 Hb_001959_240 Hb_001959_240 Hb_004542_020--Hb_001959_240 Hb_004738_110 Hb_004738_110 Hb_004542_020--Hb_004738_110 Hb_000260_590 Hb_000260_590 Hb_004542_020--Hb_000260_590 Hb_005271_160 Hb_005271_160 Hb_004542_020--Hb_005271_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.158931 0 0.531418 0 0.151035 1.03872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.458233

CAGE analysis