Hb_020479_010

Information

Type -
Description -
Location Contig20479: 814-936
Sequence    

Annotation

kegg
ID tcc:TCM_040738
description Cinnamyl alcohol dehydrogenase, 82967-79323, putative isoform 1
nr
ID AEN94093.1
description cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
swissprot
ID -
description -
trembl
ID G4W9E5
description Cinnamyl alcohol dehydrogenase (Fragment) OS=Pyrus pyrifolia GN=CAD1 PE=2 SV=1
Gene Ontology
ID GO:0004022
description cinnamoyl- reductase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020479_010 0.0 - - cinnamyl alcohol dehydrogenase [Pyrus pyrifolia]
2 Hb_001948_060 0.0012408158 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
3 Hb_187418_010 0.0024491247 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
4 Hb_003266_110 0.0040635448 - - ATP binding protein, putative [Ricinus communis]
5 Hb_137288_010 0.0049928779 - - hypothetical protein B456_003G055000 [Gossypium raimondii]
6 Hb_000003_800 0.0059448782 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001322_060 0.0059624415 - - unnamed protein product [Vitis vinifera]
8 Hb_001504_200 0.0071070453 - - Beta-3 adrenergic receptor, putative [Theobroma cacao]
9 Hb_004712_120 0.0094374068 - - Pectinesterase U1 precursor, putative [Ricinus communis]
10 Hb_003549_110 0.0096295381 - - PREDICTED: uncharacterized protein LOC105647409 [Jatropha curcas]
11 Hb_000413_090 0.0123427183 - - PREDICTED: transcription factor DYT1 [Jatropha curcas]
12 Hb_001571_070 0.0155233276 - - PREDICTED: probable inactive receptor kinase At2g26730 [Jatropha curcas]
13 Hb_002391_260 0.0163595521 - - hypothetical protein RCOM_0017280 [Ricinus communis]
14 Hb_001728_090 0.0175683757 transcription factor TF Family: MYB MYB family protein [Jatropha curcas]
15 Hb_001817_200 0.018238832 - - hypothetical protein CISIN_1g037825mg [Citrus sinensis]
16 Hb_002986_150 0.0199556622 - - hypothetical protein glysoja_022060 [Glycine soja]
17 Hb_002259_100 0.0252472281 - - PREDICTED: uncharacterized protein LOC105630152 isoform X1 [Jatropha curcas]
18 Hb_004994_270 0.029313692 - - PREDICTED: tRNA-specific adenosine deaminase 1 isoform X2 [Jatropha curcas]
19 Hb_014549_030 0.0301446761 - - receptor-kinase, putative [Ricinus communis]
20 Hb_004645_060 0.0301639048 - - PREDICTED: uncharacterized protein LOC105630948 [Jatropha curcas]

Gene co-expression network

sample Hb_020479_010 Hb_020479_010 Hb_001948_060 Hb_001948_060 Hb_020479_010--Hb_001948_060 Hb_187418_010 Hb_187418_010 Hb_020479_010--Hb_187418_010 Hb_003266_110 Hb_003266_110 Hb_020479_010--Hb_003266_110 Hb_137288_010 Hb_137288_010 Hb_020479_010--Hb_137288_010 Hb_000003_800 Hb_000003_800 Hb_020479_010--Hb_000003_800 Hb_001322_060 Hb_001322_060 Hb_020479_010--Hb_001322_060 Hb_001948_060--Hb_003266_110 Hb_001948_060--Hb_187418_010 Hb_001948_060--Hb_137288_010 Hb_001948_060--Hb_000003_800 Hb_001948_060--Hb_001322_060 Hb_001504_200 Hb_001504_200 Hb_187418_010--Hb_001504_200 Hb_187418_010--Hb_003266_110 Hb_004712_120 Hb_004712_120 Hb_187418_010--Hb_004712_120 Hb_003549_110 Hb_003549_110 Hb_187418_010--Hb_003549_110 Hb_003266_110--Hb_137288_010 Hb_003266_110--Hb_000003_800 Hb_003266_110--Hb_001322_060 Hb_137288_010--Hb_000003_800 Hb_137288_010--Hb_001322_060 Hb_000413_090 Hb_000413_090 Hb_137288_010--Hb_000413_090 Hb_000003_800--Hb_001322_060 Hb_000003_800--Hb_000413_090 Hb_001322_060--Hb_000413_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 2298.75 1041.71 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis