Hb_020499_010

Information

Type -
Description -
Location Contig20499: 49-588
Sequence    

Annotation

kegg
ID sly:104646181
description uncharacterized LOC104646181
nr
ID XP_012075160.1
description PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A061FQN0
description Uncharacterized protein OS=Theobroma cacao GN=TCM_035732 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020499_010 0.0 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
2 Hb_000376_090 0.1508018588 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
3 Hb_000115_310 0.1552463562 - - PREDICTED: zinc finger protein 6 [Jatropha curcas]
4 Hb_039894_010 0.1709975986 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
5 Hb_027405_020 0.1732570919 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT31 [Jatropha curcas]
6 Hb_002893_020 0.1732689849 - - hypothetical protein JCGZ_21319 [Jatropha curcas]
7 Hb_000589_040 0.1757158641 desease resistance Gene Name: zf-BED PREDICTED: probable disease resistance protein At1g12280 [Jatropha curcas]
8 Hb_176152_010 0.1772113204 - - Myosin heavy chain, fast skeletal muscle, embryonic, putative [Ricinus communis]
9 Hb_078477_050 0.1783686004 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105648332 isoform X1 [Jatropha curcas]
10 Hb_001009_290 0.1788726108 - - PREDICTED: elongator complex protein 3-like [Populus euphratica]
11 Hb_002493_090 0.1793458499 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 2 isoform X2 [Jatropha curcas]
12 Hb_001196_060 0.1825080522 desease resistance Gene Name: NB-ARC PREDICTED: probable disease resistance protein At5g63020 [Jatropha curcas]
13 Hb_135611_010 0.1831950711 - - PREDICTED: uncharacterized protein LOC105142085 [Populus euphratica]
14 Hb_000417_160 0.1838287321 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
15 Hb_001252_180 0.1854405168 desease resistance Gene Name: DUF3542 conserved hypothetical protein [Ricinus communis]
16 Hb_003125_060 0.1873261343 - - PREDICTED: snurportin-1 [Jatropha curcas]
17 Hb_001522_010 0.1900788628 - - PREDICTED: nucleolar protein 14 isoform X1 [Jatropha curcas]
18 Hb_000614_080 0.1907987328 - - -
19 Hb_000640_020 0.1908917475 - - PREDICTED: probable dimethyladenosine transferase [Jatropha curcas]
20 Hb_022250_110 0.1924407145 - - PREDICTED: staphylococcal nuclease domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_020499_010 Hb_020499_010 Hb_000376_090 Hb_000376_090 Hb_020499_010--Hb_000376_090 Hb_000115_310 Hb_000115_310 Hb_020499_010--Hb_000115_310 Hb_039894_010 Hb_039894_010 Hb_020499_010--Hb_039894_010 Hb_027405_020 Hb_027405_020 Hb_020499_010--Hb_027405_020 Hb_002893_020 Hb_002893_020 Hb_020499_010--Hb_002893_020 Hb_000589_040 Hb_000589_040 Hb_020499_010--Hb_000589_040 Hb_176152_010 Hb_176152_010 Hb_000376_090--Hb_176152_010 Hb_001501_060 Hb_001501_060 Hb_000376_090--Hb_001501_060 Hb_001976_090 Hb_001976_090 Hb_000376_090--Hb_001976_090 Hb_000209_070 Hb_000209_070 Hb_000376_090--Hb_000209_070 Hb_000329_090 Hb_000329_090 Hb_000376_090--Hb_000329_090 Hb_000025_650 Hb_000025_650 Hb_000376_090--Hb_000025_650 Hb_000115_310--Hb_039894_010 Hb_001140_250 Hb_001140_250 Hb_000115_310--Hb_001140_250 Hb_004586_180 Hb_004586_180 Hb_000115_310--Hb_004586_180 Hb_003747_010 Hb_003747_010 Hb_000115_310--Hb_003747_010 Hb_005122_080 Hb_005122_080 Hb_000115_310--Hb_005122_080 Hb_000029_160 Hb_000029_160 Hb_000115_310--Hb_000029_160 Hb_015763_020 Hb_015763_020 Hb_039894_010--Hb_015763_020 Hb_000445_300 Hb_000445_300 Hb_039894_010--Hb_000445_300 Hb_001009_290 Hb_001009_290 Hb_039894_010--Hb_001009_290 Hb_004136_040 Hb_004136_040 Hb_039894_010--Hb_004136_040 Hb_004920_130 Hb_004920_130 Hb_039894_010--Hb_004920_130 Hb_003125_060 Hb_003125_060 Hb_027405_020--Hb_003125_060 Hb_003020_110 Hb_003020_110 Hb_027405_020--Hb_003020_110 Hb_000310_080 Hb_000310_080 Hb_027405_020--Hb_000310_080 Hb_027405_020--Hb_000029_160 Hb_000172_550 Hb_000172_550 Hb_027405_020--Hb_000172_550 Hb_023020_060 Hb_023020_060 Hb_027405_020--Hb_023020_060 Hb_000640_230 Hb_000640_230 Hb_002893_020--Hb_000640_230 Hb_010222_030 Hb_010222_030 Hb_002893_020--Hb_010222_030 Hb_024714_020 Hb_024714_020 Hb_002893_020--Hb_024714_020 Hb_000207_310 Hb_000207_310 Hb_002893_020--Hb_000207_310 Hb_178968_100 Hb_178968_100 Hb_002893_020--Hb_178968_100 Hb_000028_610 Hb_000028_610 Hb_002893_020--Hb_000028_610 Hb_111985_080 Hb_111985_080 Hb_000589_040--Hb_111985_080 Hb_000023_060 Hb_000023_060 Hb_000589_040--Hb_000023_060 Hb_002301_080 Hb_002301_080 Hb_000589_040--Hb_002301_080 Hb_000088_130 Hb_000088_130 Hb_000589_040--Hb_000088_130 Hb_002400_240 Hb_002400_240 Hb_000589_040--Hb_002400_240 Hb_005143_030 Hb_005143_030 Hb_000589_040--Hb_005143_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.59889 0.93084 0.197817 1.03742 3.51364 1.45605
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.422036 0.552565 0.558308 1.56635 0.615787

CAGE analysis