Hb_020532_010

Information

Type -
Description -
Location Contig20532: 136-1035
Sequence    

Annotation

kegg
ID tcc:TCM_039262
description Gag protease polyprotein
nr
ID XP_012453148.1
description PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020532_010 0.0 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
2 Hb_002942_180 0.1879925645 - - phosphate transporter [Manihot esculenta]
3 Hb_094132_010 0.2048599472 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
4 Hb_103093_010 0.2153358043 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
5 Hb_000193_030 0.2175449964 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
6 Hb_021068_030 0.2288989842 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
7 Hb_004770_060 0.2389571565 - - unnamed protein product, partial [Coffea canephora]
8 Hb_030885_020 0.2487655846 - - -
9 Hb_000270_540 0.2578030974 - - hypothetical protein JCGZ_11527 [Jatropha curcas]
10 Hb_000130_170 0.2593172832 - - -
11 Hb_001278_080 0.2674902767 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
12 Hb_021943_070 0.2698862995 - - -
13 Hb_163132_010 0.2723144698 - - -
14 Hb_007356_010 0.2724500462 - - CTV.19 [Citrus trifoliata]
15 Hb_007290_020 0.2727066696 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
16 Hb_068804_060 0.2727151634 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
17 Hb_000300_140 0.2731055958 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
18 Hb_005318_010 0.2738907953 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
19 Hb_002972_060 0.2776042444 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
20 Hb_005723_070 0.2776563281 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]

Gene co-expression network

sample Hb_020532_010 Hb_020532_010 Hb_002942_180 Hb_002942_180 Hb_020532_010--Hb_002942_180 Hb_094132_010 Hb_094132_010 Hb_020532_010--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_020532_010--Hb_103093_010 Hb_000193_030 Hb_000193_030 Hb_020532_010--Hb_000193_030 Hb_021068_030 Hb_021068_030 Hb_020532_010--Hb_021068_030 Hb_004770_060 Hb_004770_060 Hb_020532_010--Hb_004770_060 Hb_008226_110 Hb_008226_110 Hb_002942_180--Hb_008226_110 Hb_131652_010 Hb_131652_010 Hb_002942_180--Hb_131652_010 Hb_006971_080 Hb_006971_080 Hb_002942_180--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_002942_180--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_002942_180--Hb_002267_120 Hb_094132_010--Hb_000193_030 Hb_094132_010--Hb_103093_010 Hb_163132_010 Hb_163132_010 Hb_094132_010--Hb_163132_010 Hb_000671_040 Hb_000671_040 Hb_094132_010--Hb_000671_040 Hb_007356_010 Hb_007356_010 Hb_094132_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_094132_010--Hb_007290_020 Hb_103093_010--Hb_000193_030 Hb_000340_330 Hb_000340_330 Hb_103093_010--Hb_000340_330 Hb_000130_170 Hb_000130_170 Hb_103093_010--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_103093_010--Hb_021943_070 Hb_005723_070 Hb_005723_070 Hb_103093_010--Hb_005723_070 Hb_000193_030--Hb_163132_010 Hb_000193_030--Hb_007356_010 Hb_000193_030--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000193_030--Hb_068804_060 Hb_002023_040 Hb_002023_040 Hb_021068_030--Hb_002023_040 Hb_001278_080 Hb_001278_080 Hb_021068_030--Hb_001278_080 Hb_021068_030--Hb_002942_180 Hb_030885_020 Hb_030885_020 Hb_021068_030--Hb_030885_020 Hb_011639_090 Hb_011639_090 Hb_021068_030--Hb_011639_090 Hb_004770_060--Hb_030885_020 Hb_169630_010 Hb_169630_010 Hb_004770_060--Hb_169630_010 Hb_003455_010 Hb_003455_010 Hb_004770_060--Hb_003455_010 Hb_004770_060--Hb_002942_180 Hb_005597_010 Hb_005597_010 Hb_004770_060--Hb_005597_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.0492718 0 0.0719767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0198267 0

CAGE analysis