Hb_020570_010

Information

Type -
Description -
Location Contig20570: 1930-3236
Sequence    

Annotation

kegg
ID brp:103833451
description cold shock protein 1-like
nr
ID XP_009804611.1
description PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020570_010 0.0 - - PREDICTED: uncharacterized protein LOC104249812 [Nicotiana sylvestris]
2 Hb_000488_020 0.2864078941 - - PREDICTED: UDP-glucose iridoid glucosyltransferase-like [Jatropha curcas]
3 Hb_004920_030 0.2970881523 transcription factor TF Family: Orphans PREDICTED: histidine kinase CKI1 [Jatropha curcas]
4 Hb_000540_010 0.3095476051 - - PREDICTED: zinc finger protein CONSTANS-LIKE 5 [Jatropha curcas]
5 Hb_007333_020 0.3100725238 - - -
6 Hb_070745_010 0.3112798767 - - PREDICTED: mitogen-activated protein kinase kinase kinase A-like [Populus euphratica]
7 Hb_143863_010 0.3161183047 - - PREDICTED: uncharacterized protein LOC105113187 isoform X2 [Populus euphratica]
8 Hb_008727_070 0.3177501725 - - PREDICTED: 16.9 kDa class I heat shock protein 1 isoform X1 [Zea mays]
9 Hb_004631_130 0.3189822713 - - helicase domain-containing family protein [Populus trichocarpa]
10 Hb_004545_100 0.3226919523 - - PREDICTED: protein BONZAI 3 [Jatropha curcas]
11 Hb_177020_010 0.3227214806 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
12 Hb_044086_010 0.3293945009 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
13 Hb_001769_130 0.3306093426 - - -
14 Hb_004074_030 0.3309733368 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_153161_010 0.3317479704 - - phospholipid-transporting atpase, putative [Ricinus communis]
16 Hb_004800_190 0.3324535283 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 4 [Jatropha curcas]
17 Hb_000991_050 0.3342073786 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
18 Hb_000488_010 0.3367835343 - - 18.1 kDa class I heat shock protein [Jatropha curcas]
19 Hb_005701_080 0.3411720032 - - ATP binding protein, putative [Ricinus communis]
20 Hb_008064_010 0.3429825953 - - PREDICTED: ubiquitin-like domain-containing CTD phosphatase 1 [Jatropha curcas]

Gene co-expression network

sample Hb_020570_010 Hb_020570_010 Hb_000488_020 Hb_000488_020 Hb_020570_010--Hb_000488_020 Hb_004920_030 Hb_004920_030 Hb_020570_010--Hb_004920_030 Hb_000540_010 Hb_000540_010 Hb_020570_010--Hb_000540_010 Hb_007333_020 Hb_007333_020 Hb_020570_010--Hb_007333_020 Hb_070745_010 Hb_070745_010 Hb_020570_010--Hb_070745_010 Hb_143863_010 Hb_143863_010 Hb_020570_010--Hb_143863_010 Hb_001514_060 Hb_001514_060 Hb_000488_020--Hb_001514_060 Hb_011885_010 Hb_011885_010 Hb_000488_020--Hb_011885_010 Hb_004800_190 Hb_004800_190 Hb_000488_020--Hb_004800_190 Hb_000488_020--Hb_143863_010 Hb_009897_020 Hb_009897_020 Hb_000488_020--Hb_009897_020 Hb_000488_020--Hb_000540_010 Hb_005499_010 Hb_005499_010 Hb_004920_030--Hb_005499_010 Hb_091226_010 Hb_091226_010 Hb_004920_030--Hb_091226_010 Hb_003119_050 Hb_003119_050 Hb_004920_030--Hb_003119_050 Hb_027402_040 Hb_027402_040 Hb_004920_030--Hb_027402_040 Hb_000454_140 Hb_000454_140 Hb_004920_030--Hb_000454_140 Hb_000152_150 Hb_000152_150 Hb_004920_030--Hb_000152_150 Hb_000540_010--Hb_001514_060 Hb_001079_030 Hb_001079_030 Hb_000540_010--Hb_001079_030 Hb_078160_010 Hb_078160_010 Hb_000540_010--Hb_078160_010 Hb_000659_020 Hb_000659_020 Hb_000540_010--Hb_000659_020 Hb_000991_050 Hb_000991_050 Hb_000540_010--Hb_000991_050 Hb_007333_020--Hb_070745_010 Hb_006816_510 Hb_006816_510 Hb_007333_020--Hb_006816_510 Hb_000171_040 Hb_000171_040 Hb_007333_020--Hb_000171_040 Hb_008064_010 Hb_008064_010 Hb_007333_020--Hb_008064_010 Hb_136850_040 Hb_136850_040 Hb_007333_020--Hb_136850_040 Hb_000146_060 Hb_000146_060 Hb_007333_020--Hb_000146_060 Hb_070745_010--Hb_006816_510 Hb_070745_010--Hb_000171_040 Hb_070745_010--Hb_000146_060 Hb_070745_010--Hb_008064_010 Hb_070745_010--Hb_136850_040 Hb_000960_010 Hb_000960_010 Hb_143863_010--Hb_000960_010 Hb_136886_010 Hb_136886_010 Hb_143863_010--Hb_136886_010 Hb_090459_010 Hb_090459_010 Hb_143863_010--Hb_090459_010 Hb_001565_120 Hb_001565_120 Hb_143863_010--Hb_001565_120 Hb_143863_010--Hb_011885_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.140492 0.566724 0.104153 0 0.194458 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0760653 0 0 0.0242862 0.118908

CAGE analysis