Hb_020580_010

Information

Type -
Description -
Location Contig20580: 390-1205
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020580_010 0.0 - - -
2 Hb_013429_020 0.0818124226 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
3 Hb_001638_220 0.1833238755 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003321_020 0.2079923461 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
5 Hb_003117_040 0.2090963255 - - cytochrome P450, putative [Ricinus communis]
6 Hb_004157_110 0.2247421192 - - -
7 Hb_009421_010 0.2416357286 - - -
8 Hb_010142_080 0.253473749 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
9 Hb_183612_030 0.274857487 - - PREDICTED: uncharacterized protein LOC105632256 [Jatropha curcas]
10 Hb_054362_010 0.2842426462 - - PREDICTED: uncharacterized protein LOC105650428 [Jatropha curcas]
11 Hb_021616_010 0.2869254014 - - -
12 Hb_028486_070 0.2886037291 - - hypothetical protein CISIN_1g028119mg [Citrus sinensis]
13 Hb_127993_010 0.2899619341 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
14 Hb_008370_010 0.2920671796 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_169574_010 0.3064726123 - - PREDICTED: uncharacterized protein LOC104120373 [Nicotiana tomentosiformis]
16 Hb_048874_010 0.3075249032 - - hypothetical protein POPTR_0016s10870g [Populus trichocarpa]
17 Hb_008779_010 0.3088897997 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
18 Hb_005799_040 0.3101850576 - - PREDICTED: bidirectional sugar transporter SWEET4-like isoform X1 [Gossypium raimondii]
19 Hb_008246_050 0.3102049656 - - -
20 Hb_008643_010 0.3140938639 - - hypothetical protein JCGZ_04298 [Jatropha curcas]

Gene co-expression network

sample Hb_020580_010 Hb_020580_010 Hb_013429_020 Hb_013429_020 Hb_020580_010--Hb_013429_020 Hb_001638_220 Hb_001638_220 Hb_020580_010--Hb_001638_220 Hb_003321_020 Hb_003321_020 Hb_020580_010--Hb_003321_020 Hb_003117_040 Hb_003117_040 Hb_020580_010--Hb_003117_040 Hb_004157_110 Hb_004157_110 Hb_020580_010--Hb_004157_110 Hb_009421_010 Hb_009421_010 Hb_020580_010--Hb_009421_010 Hb_013429_020--Hb_003321_020 Hb_013429_020--Hb_003117_040 Hb_010142_080 Hb_010142_080 Hb_013429_020--Hb_010142_080 Hb_013429_020--Hb_009421_010 Hb_021616_010 Hb_021616_010 Hb_013429_020--Hb_021616_010 Hb_008779_010 Hb_008779_010 Hb_001638_220--Hb_008779_010 Hb_008643_010 Hb_008643_010 Hb_001638_220--Hb_008643_010 Hb_001638_220--Hb_013429_020 Hb_054362_010 Hb_054362_010 Hb_001638_220--Hb_054362_010 Hb_006683_010 Hb_006683_010 Hb_001638_220--Hb_006683_010 Hb_183612_030 Hb_183612_030 Hb_003321_020--Hb_183612_030 Hb_003321_020--Hb_003117_040 Hb_032299_060 Hb_032299_060 Hb_003321_020--Hb_032299_060 Hb_184403_010 Hb_184403_010 Hb_003321_020--Hb_184403_010 Hb_003117_040--Hb_184403_010 Hb_003117_040--Hb_183612_030 Hb_003117_040--Hb_001638_220 Hb_004157_110--Hb_013429_020 Hb_174876_010 Hb_174876_010 Hb_004157_110--Hb_174876_010 Hb_028486_070 Hb_028486_070 Hb_004157_110--Hb_028486_070 Hb_000084_040 Hb_000084_040 Hb_004157_110--Hb_000084_040 Hb_011316_120 Hb_011316_120 Hb_004157_110--Hb_011316_120 Hb_008370_010 Hb_008370_010 Hb_009421_010--Hb_008370_010 Hb_009421_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_009421_010--Hb_005532_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0448706
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.111857 0.152766 0

CAGE analysis