Hb_020581_050

Information

Type -
Description -
Location Contig20581: 83500-95080
Sequence    

Annotation

kegg
ID ath:AT2G16620
description putative protein kinase
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0016301
description serine-threonine protein plant-

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21216: 51942-95174
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020581_050 0.0 - - -
2 Hb_011552_020 0.1485542708 - - hypothetical protein F383_28301 [Gossypium arboreum]
3 Hb_108884_020 0.1644352506 - - hypothetical protein JCGZ_23602 [Jatropha curcas]
4 Hb_006475_020 0.1644667786 - - PREDICTED: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
5 Hb_001864_010 0.165481176 - - conserved hypothetical protein [Ricinus communis]
6 Hb_029508_030 0.1789964626 transcription factor TF Family: C2H2 hypothetical protein POPTR_0002s04880g [Populus trichocarpa]
7 Hb_000286_190 0.1810407442 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Jatropha curcas]
8 Hb_000177_120 0.1840218337 - - PREDICTED: probable serine/threonine-protein kinase At1g18390 isoform X1 [Jatropha curcas]
9 Hb_020581_020 0.1860423334 - - hypothetical protein B456_003G065300 [Gossypium raimondii]
10 Hb_052186_010 0.1879425254 - - hypothetical protein JCGZ_17055 [Jatropha curcas]
11 Hb_000608_450 0.1887626062 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
12 Hb_020581_040 0.1915722651 - - PREDICTED: inactive protein kinase SELMODRAFT_444075-like isoform X3 [Sesamum indicum]
13 Hb_006326_030 0.1937913396 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000363_470 0.20083356 - - hypothetical protein JCGZ_00950 [Jatropha curcas]
15 Hb_000920_360 0.201168635 - - PREDICTED: (R,S)-reticuline 7-O-methyltransferase-like [Jatropha curcas]
16 Hb_001611_010 0.2024322337 - - scab resistance family protein [Populus trichocarpa]
17 Hb_044313_010 0.2072454784 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000221_170 0.2078253013 - - PREDICTED: alcohol dehydrogenase-like 2 [Jatropha curcas]
19 Hb_005797_030 0.207841814 - - PREDICTED: MATE efflux family protein LAL5-like [Jatropha curcas]
20 Hb_001225_060 0.2085754409 - - BnaC03g58850D [Brassica napus]

Gene co-expression network

sample Hb_020581_050 Hb_020581_050 Hb_011552_020 Hb_011552_020 Hb_020581_050--Hb_011552_020 Hb_108884_020 Hb_108884_020 Hb_020581_050--Hb_108884_020 Hb_006475_020 Hb_006475_020 Hb_020581_050--Hb_006475_020 Hb_001864_010 Hb_001864_010 Hb_020581_050--Hb_001864_010 Hb_029508_030 Hb_029508_030 Hb_020581_050--Hb_029508_030 Hb_000286_190 Hb_000286_190 Hb_020581_050--Hb_000286_190 Hb_052186_010 Hb_052186_010 Hb_011552_020--Hb_052186_010 Hb_011552_020--Hb_006475_020 Hb_011552_020--Hb_108884_020 Hb_011552_020--Hb_001864_010 Hb_005436_020 Hb_005436_020 Hb_011552_020--Hb_005436_020 Hb_000608_450 Hb_000608_450 Hb_108884_020--Hb_000608_450 Hb_000046_060 Hb_000046_060 Hb_108884_020--Hb_000046_060 Hb_009012_020 Hb_009012_020 Hb_108884_020--Hb_009012_020 Hb_108884_020--Hb_000286_190 Hb_004190_010 Hb_004190_010 Hb_108884_020--Hb_004190_010 Hb_000684_020 Hb_000684_020 Hb_108884_020--Hb_000684_020 Hb_044313_010 Hb_044313_010 Hb_006475_020--Hb_044313_010 Hb_002142_010 Hb_002142_010 Hb_006475_020--Hb_002142_010 Hb_032299_070 Hb_032299_070 Hb_006475_020--Hb_032299_070 Hb_018212_020 Hb_018212_020 Hb_006475_020--Hb_018212_020 Hb_005797_030 Hb_005797_030 Hb_001864_010--Hb_005797_030 Hb_001864_010--Hb_029508_030 Hb_002007_230 Hb_002007_230 Hb_001864_010--Hb_002007_230 Hb_000221_170 Hb_000221_170 Hb_001864_010--Hb_000221_170 Hb_001864_010--Hb_000286_190 Hb_008503_020 Hb_008503_020 Hb_001864_010--Hb_008503_020 Hb_029508_030--Hb_000286_190 Hb_029508_030--Hb_000221_170 Hb_000920_360 Hb_000920_360 Hb_029508_030--Hb_000920_360 Hb_001709_070 Hb_001709_070 Hb_029508_030--Hb_001709_070 Hb_000876_050 Hb_000876_050 Hb_029508_030--Hb_000876_050 Hb_000286_190--Hb_000920_360 Hb_000286_190--Hb_005797_030 Hb_004574_010 Hb_004574_010 Hb_000286_190--Hb_004574_010 Hb_000286_190--Hb_000608_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0410851 6.68454 0 0.19878 0 0.635791
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 11.9806 2.5894

CAGE analysis