Hb_020665_010

Information

Type -
Description -
Location Contig20665: 2400-4753
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G0315001
description hypothetical protein
nr
ID XP_008375744.1
description PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
swissprot
ID -
description -
trembl
ID K4CLG2
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc08g065830.2 PE=4 SV=1
Gene Ontology
ID GO:0005488
description lysine-specific demethylase jmj25-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21279: 2303-21599 , PASA_asmbl_21280: 2667-8550
cDNA
(Sanger)
(ID:Location)		 030_H21.ab1: 2667-3072

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020665_010 0.0 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
2 Hb_145915_010 0.0972599546 - - PREDICTED: uncharacterized protein LOC105630963 [Jatropha curcas]
3 Hb_009270_010 0.1015333015 - - PREDICTED: uncharacterized protein LOC103421213 [Malus domestica]
4 Hb_007922_020 0.1048242279 - - PREDICTED: uncharacterized protein LOC105646505 [Jatropha curcas]
5 Hb_001010_070 0.1133271101 - - PREDICTED: carboxymethylenebutenolidase homolog [Jatropha curcas]
6 Hb_007317_140 0.1196634857 - - expressed protein, putative [Ricinus communis]
7 Hb_001005_050 0.1229917174 - - hypothetical protein Csa_3G599480 [Cucumis sativus]
8 Hb_003206_020 0.1288124623 - - PREDICTED: putative vacuolar protein sorting-associated protein 13A isoform X2 [Vitis vinifera]
9 Hb_003170_040 0.1289228667 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
10 Hb_001435_030 0.13043774 - - PREDICTED: uncharacterized protein LOC105645073 [Jatropha curcas]
11 Hb_001117_170 0.1347954437 - - -
12 Hb_066487_010 0.138649458 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000261_060 0.1391193753 - - PREDICTED: pre-mRNA-splicing factor 38B-like [Jatropha curcas]
14 Hb_010710_070 0.1438919378 - - PREDICTED: protein TOC75-3, chloroplastic-like [Populus euphratica]
15 Hb_188126_010 0.1446043832 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ25-like isoform X3 [Jatropha curcas]
16 Hb_002095_010 0.1450929657 - - PREDICTED: glutamate receptor 3.7 isoform X1 [Jatropha curcas]
17 Hb_086639_040 0.1456941554 - - PREDICTED: phosphatidylinositol 4-kinase gamma 7-like [Jatropha curcas]
18 Hb_001863_500 0.1463032777 - - Protein brittle-1, chloroplast precursor, putative [Ricinus communis]
19 Hb_007805_010 0.1467798618 - - PREDICTED: ribosome biogenesis protein BMS1 homolog [Jatropha curcas]
20 Hb_000062_450 0.1468833146 - - hypothetical protein MTR_081s0009, partial [Medicago truncatula]

Gene co-expression network

sample Hb_020665_010 Hb_020665_010 Hb_145915_010 Hb_145915_010 Hb_020665_010--Hb_145915_010 Hb_009270_010 Hb_009270_010 Hb_020665_010--Hb_009270_010 Hb_007922_020 Hb_007922_020 Hb_020665_010--Hb_007922_020 Hb_001010_070 Hb_001010_070 Hb_020665_010--Hb_001010_070 Hb_007317_140 Hb_007317_140 Hb_020665_010--Hb_007317_140 Hb_001005_050 Hb_001005_050 Hb_020665_010--Hb_001005_050 Hb_003170_040 Hb_003170_040 Hb_145915_010--Hb_003170_040 Hb_012286_010 Hb_012286_010 Hb_145915_010--Hb_012286_010 Hb_145915_010--Hb_009270_010 Hb_002276_060 Hb_002276_060 Hb_145915_010--Hb_002276_060 Hb_000661_030 Hb_000661_030 Hb_145915_010--Hb_000661_030 Hb_001117_170 Hb_001117_170 Hb_009270_010--Hb_001117_170 Hb_000005_190 Hb_000005_190 Hb_009270_010--Hb_000005_190 Hb_188126_010 Hb_188126_010 Hb_009270_010--Hb_188126_010 Hb_003498_130 Hb_003498_130 Hb_009270_010--Hb_003498_130 Hb_000261_060 Hb_000261_060 Hb_007922_020--Hb_000261_060 Hb_036790_080 Hb_036790_080 Hb_007922_020--Hb_036790_080 Hb_001435_030 Hb_001435_030 Hb_007922_020--Hb_001435_030 Hb_003994_110 Hb_003994_110 Hb_007922_020--Hb_003994_110 Hb_007922_020--Hb_007317_140 Hb_032920_050 Hb_032920_050 Hb_007922_020--Hb_032920_050 Hb_000684_440 Hb_000684_440 Hb_001010_070--Hb_000684_440 Hb_002304_070 Hb_002304_070 Hb_001010_070--Hb_002304_070 Hb_001010_070--Hb_009270_010 Hb_002419_030 Hb_002419_030 Hb_001010_070--Hb_002419_030 Hb_008447_040 Hb_008447_040 Hb_001010_070--Hb_008447_040 Hb_028912_050 Hb_028912_050 Hb_007317_140--Hb_028912_050 Hb_010710_070 Hb_010710_070 Hb_007317_140--Hb_010710_070 Hb_007317_140--Hb_000261_060 Hb_001301_100 Hb_001301_100 Hb_007317_140--Hb_001301_100 Hb_001442_040 Hb_001442_040 Hb_007317_140--Hb_001442_040 Hb_003020_030 Hb_003020_030 Hb_007317_140--Hb_003020_030 Hb_004680_120 Hb_004680_120 Hb_001005_050--Hb_004680_120 Hb_002667_050 Hb_002667_050 Hb_001005_050--Hb_002667_050 Hb_003544_140 Hb_003544_140 Hb_001005_050--Hb_003544_140 Hb_001005_050--Hb_007922_020 Hb_011228_010 Hb_011228_010 Hb_001005_050--Hb_011228_010 Hb_001005_050--Hb_000261_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.17143 5.24591 2.78431 4.82159 14.5045 19.1408
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.02531 8.41849 15.358 14.7676 27.8365

CAGE analysis