Hb_020665_030

Information

Type -
Description -
Location Contig20665: 21230-23994
Sequence    

Annotation

kegg
ID rcu:RCOM_1397010
description hypothetical protein
nr
ID XP_002520404.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9SSE9
description Lysine-specific demethylase JMJ25 OS=Arabidopsis thaliana GN=JMJ25 PE=1 SV=1
trembl
ID B9S335
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1397010 PE=4 SV=1
Gene Ontology
ID GO:0008270
description lysine-specific demethylase jmj25-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21279: 2303-21599 , PASA_asmbl_21282: 21704-22025
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020665_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_009151_020 0.0573638925 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]
3 Hb_000329_130 0.0654136726 - - beta-tubulin cofactor d, putative [Ricinus communis]
4 Hb_000347_570 0.067452234 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
5 Hb_000714_050 0.0687209871 - - PREDICTED: pentatricopeptide repeat-containing protein At2g16880-like [Jatropha curcas]
6 Hb_003847_120 0.0721486781 - - WD-repeat protein, putative [Ricinus communis]
7 Hb_000320_200 0.0723440139 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
8 Hb_002471_210 0.0729806583 - - PREDICTED: THO complex subunit 2 [Jatropha curcas]
9 Hb_000567_010 0.0734247103 - - PREDICTED: uncharacterized protein LOC105631110 [Jatropha curcas]
10 Hb_015026_050 0.0740567069 - - XPA-binding protein, putative [Ricinus communis]
11 Hb_000951_110 0.0753203729 - - heat shock protein, putative [Ricinus communis]
12 Hb_010193_050 0.0759555223 - - conserved hypothetical protein [Ricinus communis]
13 Hb_175338_020 0.0766035039 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
14 Hb_002652_040 0.0768532909 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_147737_010 0.0768610646 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
16 Hb_000173_510 0.0772607071 - - PREDICTED: AP-5 complex subunit mu [Jatropha curcas]
17 Hb_000768_070 0.0778964829 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
18 Hb_002411_120 0.0781860544 - - PREDICTED: uncharacterized protein LOC105631645 [Jatropha curcas]
19 Hb_002221_050 0.0787890484 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
20 Hb_004162_280 0.0826301856 - - PREDICTED: uncharacterized protein LOC105628004 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020665_030 Hb_020665_030 Hb_009151_020 Hb_009151_020 Hb_020665_030--Hb_009151_020 Hb_000329_130 Hb_000329_130 Hb_020665_030--Hb_000329_130 Hb_000347_570 Hb_000347_570 Hb_020665_030--Hb_000347_570 Hb_000714_050 Hb_000714_050 Hb_020665_030--Hb_000714_050 Hb_003847_120 Hb_003847_120 Hb_020665_030--Hb_003847_120 Hb_000320_200 Hb_000320_200 Hb_020665_030--Hb_000320_200 Hb_009151_020--Hb_000347_570 Hb_009151_020--Hb_000329_130 Hb_001178_150 Hb_001178_150 Hb_009151_020--Hb_001178_150 Hb_001473_090 Hb_001473_090 Hb_009151_020--Hb_001473_090 Hb_000914_080 Hb_000914_080 Hb_009151_020--Hb_000914_080 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_017895_020 Hb_017895_020 Hb_000329_130--Hb_017895_020 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_000347_570--Hb_001178_150 Hb_000347_570--Hb_001473_090 Hb_000025_650 Hb_000025_650 Hb_000347_570--Hb_000025_650 Hb_001417_050 Hb_001417_050 Hb_000347_570--Hb_001417_050 Hb_010381_060 Hb_010381_060 Hb_000714_050--Hb_010381_060 Hb_001235_200 Hb_001235_200 Hb_000714_050--Hb_001235_200 Hb_000714_050--Hb_000320_200 Hb_005892_030 Hb_005892_030 Hb_000714_050--Hb_005892_030 Hb_000329_090 Hb_000329_090 Hb_000714_050--Hb_000329_090 Hb_000714_050--Hb_000329_130 Hb_015026_050 Hb_015026_050 Hb_003847_120--Hb_015026_050 Hb_003847_120--Hb_001473_090 Hb_006915_060 Hb_006915_060 Hb_003847_120--Hb_006915_060 Hb_000475_020 Hb_000475_020 Hb_003847_120--Hb_000475_020 Hb_000029_320 Hb_000029_320 Hb_003847_120--Hb_000029_320 Hb_001599_030 Hb_001599_030 Hb_000320_200--Hb_001599_030 Hb_002221_050 Hb_002221_050 Hb_000320_200--Hb_002221_050 Hb_000072_350 Hb_000072_350 Hb_000320_200--Hb_000072_350 Hb_003952_150 Hb_003952_150 Hb_000320_200--Hb_003952_150 Hb_000743_040 Hb_000743_040 Hb_000320_200--Hb_000743_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.6881 16.1465 8.98137 7.83847 30.4336 30.8648
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.47406 10.4935 9.68489 10.3161 11.1821

CAGE analysis