Hb_020712_020

Information

Type transcription factor
Description TF Family: SET
Location Contig20712: 14588-15853
Sequence    

Annotation

kegg
ID rcu:RCOM_1579260
description trithorax, putative (EC:2.1.1.43)
nr
ID XP_010913480.1
description PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
swissprot
ID Q8GZ42
description Histone-lysine N-methyltransferase ATX5 OS=Arabidopsis thaliana GN=ATX5 PE=2 SV=1
trembl
ID B9RII0
description Histone-lysine N-methyltransferase OS=Ricinus communis GN=RCOM_1579260 PE=4 SV=1
Gene Ontology
ID GO:0005515
description histone-lysine n-methyltransferase atx5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21356: 14266-88682 , PASA_asmbl_21357: 14433-16172
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020712_020 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ATX4 [Elaeis guineensis]
2 Hb_025526_110 0.0088358479 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 [Jatropha curcas]
3 Hb_000355_020 0.0092417453 - - -
4 Hb_001278_010 0.0116156441 - - conserved hypothetical protein [Ricinus communis]
5 Hb_041188_010 0.0121724814 - - PREDICTED: O-acyltransferase WSD1-like [Nicotiana tomentosiformis]
6 Hb_154146_010 0.0320957286 - - hypothetical protein JCGZ_00346 [Jatropha curcas]
7 Hb_001304_150 0.0349366143 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
8 Hb_000313_240 0.0469074334 - - hypothetical protein RCOM_0377590 [Ricinus communis]
9 Hb_012090_010 0.0474358115 - - hypothetical protein RCOM_0904330 [Ricinus communis]
10 Hb_000331_600 0.0502510457 - - PREDICTED: probable Ufm1-specific protease [Jatropha curcas]
11 Hb_002092_050 0.0529428593 - - hypothetical protein JCGZ_05877 [Jatropha curcas]
12 Hb_065272_010 0.0571812735 - - hypothetical protein JCGZ_06349 [Jatropha curcas]
13 Hb_031546_010 0.0605837196 - - hypothetical protein JCGZ_21533 [Jatropha curcas]
14 Hb_000029_240 0.0623057901 - - PREDICTED: pre-mRNA-splicing factor SLU7-A-like [Elaeis guineensis]
15 Hb_025161_040 0.0688844181 - - kinase, putative [Ricinus communis]
16 Hb_092416_020 0.0717379256 - - protein with unknown function [Ricinus communis]
17 Hb_001946_420 0.0752344166 - - protein with unknown function [Ricinus communis]
18 Hb_002368_120 0.0768005449 - - hypothetical protein VITISV_033181 [Vitis vinifera]
19 Hb_002391_060 0.0802545366 - - PREDICTED: uncharacterized protein LOC100853799 [Vitis vinifera]
20 Hb_051677_010 0.0810448506 - - Uncharacterized protein TCM_017953 [Theobroma cacao]

Gene co-expression network

sample Hb_020712_020 Hb_020712_020 Hb_025526_110 Hb_025526_110 Hb_020712_020--Hb_025526_110 Hb_000355_020 Hb_000355_020 Hb_020712_020--Hb_000355_020 Hb_001278_010 Hb_001278_010 Hb_020712_020--Hb_001278_010 Hb_041188_010 Hb_041188_010 Hb_020712_020--Hb_041188_010 Hb_154146_010 Hb_154146_010 Hb_020712_020--Hb_154146_010 Hb_001304_150 Hb_001304_150 Hb_020712_020--Hb_001304_150 Hb_025526_110--Hb_041188_010 Hb_025526_110--Hb_000355_020 Hb_025526_110--Hb_001278_010 Hb_025526_110--Hb_154146_010 Hb_025526_110--Hb_001304_150 Hb_000355_020--Hb_001278_010 Hb_000355_020--Hb_041188_010 Hb_000355_020--Hb_154146_010 Hb_000355_020--Hb_001304_150 Hb_001278_010--Hb_154146_010 Hb_001278_010--Hb_001304_150 Hb_001278_010--Hb_041188_010 Hb_041188_010--Hb_154146_010 Hb_041188_010--Hb_001304_150 Hb_154146_010--Hb_001304_150 Hb_000313_240 Hb_000313_240 Hb_154146_010--Hb_000313_240 Hb_012090_010 Hb_012090_010 Hb_154146_010--Hb_012090_010 Hb_000331_600 Hb_000331_600 Hb_154146_010--Hb_000331_600 Hb_002092_050 Hb_002092_050 Hb_154146_010--Hb_002092_050 Hb_001304_150--Hb_000313_240 Hb_001304_150--Hb_012090_010 Hb_001304_150--Hb_000331_600 Hb_001304_150--Hb_002092_050 Hb_065272_010 Hb_065272_010 Hb_001304_150--Hb_065272_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 1.16011 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 0

CAGE analysis