Hb_020719_030

Information

Type -
Description -
Location Contig20719: 75619-84589
Sequence    

Annotation

kegg
ID rcu:RCOM_0669360
description Protein pob, putative
nr
ID XP_012085023.1
description PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
swissprot
ID Q7SXW4
description ER membrane protein complex subunit 3 OS=Danio rerio GN=emc3 PE=2 SV=1
trembl
ID A0A067K3W2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22252 PE=4 SV=1
Gene Ontology
ID GO:0016020
description er membrane protein complex subunit 3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21359: 75596-82562
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020719_030 0.0 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
2 Hb_002272_180 0.0499848925 - - hypothetical protein JCGZ_23380 [Jatropha curcas]
3 Hb_033834_060 0.0550505408 - - DNA-binding bromodomain-containing family protein [Populus trichocarpa]
4 Hb_001488_410 0.0586354105 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
5 Hb_004117_130 0.0606747633 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
6 Hb_000260_170 0.0619093098 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
7 Hb_103012_010 0.0693073274 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
8 Hb_000618_030 0.0723344711 - - PREDICTED: serine/threonine-protein kinase TOUSLED-like isoform X4 [Populus euphratica]
9 Hb_006252_040 0.0728747712 - - queuine tRNA-ribosyltransferase, putative [Ricinus communis]
10 Hb_002671_100 0.0761556532 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
11 Hb_001444_010 0.0770126158 transcription factor TF Family: DDT PREDICTED: DDT domain-containing protein DDB_G0282237 isoform X1 [Jatropha curcas]
12 Hb_000364_060 0.0784036593 - - JHL03K20.4 [Jatropha curcas]
13 Hb_000212_240 0.0784869004 - - short-chain dehydrogenase, putative [Ricinus communis]
14 Hb_007317_110 0.0784928301 - - PREDICTED: uncharacterized RNA-binding protein C660.15-like [Jatropha curcas]
15 Hb_000058_100 0.0786719111 - - PREDICTED: RNA-directed DNA methylation 4 [Jatropha curcas]
16 Hb_009627_010 0.0787804502 - - Protein dom-3, putative [Ricinus communis]
17 Hb_000025_110 0.0793818789 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
18 Hb_004450_010 0.0794009612 - - PREDICTED: methyltransferase-like protein 10 [Jatropha curcas]
19 Hb_003090_080 0.0801232753 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
20 Hb_000538_100 0.0801810144 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_020719_030 Hb_020719_030 Hb_002272_180 Hb_002272_180 Hb_020719_030--Hb_002272_180 Hb_033834_060 Hb_033834_060 Hb_020719_030--Hb_033834_060 Hb_001488_410 Hb_001488_410 Hb_020719_030--Hb_001488_410 Hb_004117_130 Hb_004117_130 Hb_020719_030--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_000364_060 Hb_000364_060 Hb_002272_180--Hb_000364_060 Hb_002067_040 Hb_002067_040 Hb_002272_180--Hb_002067_040 Hb_012490_030 Hb_012490_030 Hb_002272_180--Hb_012490_030 Hb_004450_010 Hb_004450_010 Hb_002272_180--Hb_004450_010 Hb_002272_180--Hb_033834_060 Hb_004689_050 Hb_004689_050 Hb_033834_060--Hb_004689_050 Hb_004429_100 Hb_004429_100 Hb_033834_060--Hb_004429_100 Hb_009627_010 Hb_009627_010 Hb_033834_060--Hb_009627_010 Hb_001172_010 Hb_001172_010 Hb_033834_060--Hb_001172_010 Hb_033834_060--Hb_001488_410 Hb_004102_140 Hb_004102_140 Hb_001488_410--Hb_004102_140 Hb_003464_020 Hb_003464_020 Hb_001488_410--Hb_003464_020 Hb_000023_190 Hb_000023_190 Hb_001488_410--Hb_000023_190 Hb_006252_040 Hb_006252_040 Hb_001488_410--Hb_006252_040 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_001946_010 Hb_001946_010 Hb_000260_170--Hb_001946_010 Hb_000260_170--Hb_103012_010 Hb_040262_010 Hb_040262_010 Hb_000260_170--Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_000260_170--Hb_002671_100 Hb_103012_010--Hb_001946_010 Hb_000538_100 Hb_000538_100 Hb_103012_010--Hb_000538_100 Hb_007317_110 Hb_007317_110 Hb_103012_010--Hb_007317_110 Hb_011930_160 Hb_011930_160 Hb_103012_010--Hb_011930_160 Hb_002783_240 Hb_002783_240 Hb_103012_010--Hb_002783_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
84.39 31.4548 41.3079 55.2488 105.535 137.767
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.6605 56.5857 56.8854 71.6044 43.0627

CAGE analysis