Hb_020730_010

Information

Type -
Description -
Location Contig20730: 33-1204
Sequence    

Annotation

kegg
ID cic:CICLE_v10010243mg
description hypothetical protein
nr
ID XP_006450885.1
description hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
swissprot
ID C0LGP4
description Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=2 SV=1
trembl
ID V4UIU5
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v10010243mg PE=3 SV=1
Gene Ontology
ID GO:0016301
description leucine-rich repeat protein kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020730_010 0.0 - - hypothetical protein CICLE_v10010243mg, partial [Citrus clementina]
2 Hb_002843_100 0.1786304306 - - -
3 Hb_036227_010 0.1814592046 - - -
4 Hb_179511_010 0.1834339262 - - -
5 Hb_000482_110 0.1857599569 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
6 Hb_002141_020 0.191180315 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
7 Hb_001754_170 0.1921221455 - - PREDICTED: 60S ribosome subunit biogenesis protein NIP7 homolog [Jatropha curcas]
8 Hb_000107_170 0.1922962755 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
9 Hb_107847_010 0.1953976049 - - 3-isopropylmalate dehydratase, putative [Ricinus communis]
10 Hb_002498_180 0.1995928367 - - PREDICTED: U3 small nucleolar RNA-associated protein 6 homolog [Jatropha curcas]
11 Hb_004109_060 0.2032374593 - - hypothetical protein POPTR_0019s12520g [Populus trichocarpa]
12 Hb_001769_020 0.2066747524 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 4, mitochondrial-like [Jatropha curcas]
13 Hb_004032_060 0.2080243017 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]
14 Hb_004048_140 0.2080929933 - - -
15 Hb_003581_110 0.2107125185 - - PREDICTED: uncharacterized protein LOC105649778 isoform X2 [Jatropha curcas]
16 Hb_000264_060 0.2112784412 - - PREDICTED: RNA polymerase-associated protein RTF1 homolog [Jatropha curcas]
17 Hb_002400_390 0.2116335066 - - PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
18 Hb_007017_060 0.2135581644 - - PREDICTED: 5-formyltetrahydrofolate cyclo-ligase, mitochondrial-like [Jatropha curcas]
19 Hb_009801_010 0.2172474918 - - ATPase inhibitor, putative [Ricinus communis]
20 Hb_171554_090 0.2179309308 - - PREDICTED: 10 kDa chaperonin [Jatropha curcas]

Gene co-expression network

sample Hb_020730_010 Hb_020730_010 Hb_002843_100 Hb_002843_100 Hb_020730_010--Hb_002843_100 Hb_036227_010 Hb_036227_010 Hb_020730_010--Hb_036227_010 Hb_179511_010 Hb_179511_010 Hb_020730_010--Hb_179511_010 Hb_000482_110 Hb_000482_110 Hb_020730_010--Hb_000482_110 Hb_002141_020 Hb_002141_020 Hb_020730_010--Hb_002141_020 Hb_001754_170 Hb_001754_170 Hb_020730_010--Hb_001754_170 Hb_001633_100 Hb_001633_100 Hb_002843_100--Hb_001633_100 Hb_002002_020 Hb_002002_020 Hb_002843_100--Hb_002002_020 Hb_002843_100--Hb_001754_170 Hb_002400_390 Hb_002400_390 Hb_002843_100--Hb_002400_390 Hb_002405_020 Hb_002405_020 Hb_002843_100--Hb_002405_020 Hb_003581_110 Hb_003581_110 Hb_002843_100--Hb_003581_110 Hb_000504_170 Hb_000504_170 Hb_036227_010--Hb_000504_170 Hb_007778_020 Hb_007778_020 Hb_036227_010--Hb_007778_020 Hb_107847_010 Hb_107847_010 Hb_036227_010--Hb_107847_010 Hb_000258_320 Hb_000258_320 Hb_036227_010--Hb_000258_320 Hb_014720_170 Hb_014720_170 Hb_036227_010--Hb_014720_170 Hb_179511_010--Hb_003581_110 Hb_000392_280 Hb_000392_280 Hb_179511_010--Hb_000392_280 Hb_004032_050 Hb_004032_050 Hb_179511_010--Hb_004032_050 Hb_009801_010 Hb_009801_010 Hb_179511_010--Hb_009801_010 Hb_179511_010--Hb_001754_170 Hb_000258_130 Hb_000258_130 Hb_179511_010--Hb_000258_130 Hb_000482_110--Hb_002400_390 Hb_004032_060 Hb_004032_060 Hb_000482_110--Hb_004032_060 Hb_004447_030 Hb_004447_030 Hb_000482_110--Hb_004447_030 Hb_000265_150 Hb_000265_150 Hb_000482_110--Hb_000265_150 Hb_000920_280 Hb_000920_280 Hb_000482_110--Hb_000920_280 Hb_010968_010 Hb_010968_010 Hb_000482_110--Hb_010968_010 Hb_000331_500 Hb_000331_500 Hb_002141_020--Hb_000331_500 Hb_136765_010 Hb_136765_010 Hb_002141_020--Hb_136765_010 Hb_004662_010 Hb_004662_010 Hb_002141_020--Hb_004662_010 Hb_012867_010 Hb_012867_010 Hb_002141_020--Hb_012867_010 Hb_004109_060 Hb_004109_060 Hb_002141_020--Hb_004109_060 Hb_004241_040 Hb_004241_040 Hb_002141_020--Hb_004241_040 Hb_007534_040 Hb_007534_040 Hb_001754_170--Hb_007534_040 Hb_004374_150 Hb_004374_150 Hb_001754_170--Hb_004374_150 Hb_000236_300 Hb_000236_300 Hb_001754_170--Hb_000236_300 Hb_175612_010 Hb_175612_010 Hb_001754_170--Hb_175612_010 Hb_000107_170 Hb_000107_170 Hb_001754_170--Hb_000107_170 Hb_000617_220 Hb_000617_220 Hb_001754_170--Hb_000617_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.67988 1.37627 0.442243 0.430292 2.90035 1.51344
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03138 1.80682 0.0681413 0.0296141 0

CAGE analysis