Hb_020763_020

Information

Type -
Description -
Location Contig20763: 2017-6005
Sequence    

Annotation

kegg
ID pop:POPTR_0001s27010g
description POPTRDRAFT_752292; hypothetical protein
nr
ID XP_002298418.1
description hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
swissprot
ID Q9SU30
description F-box protein CPR30 OS=Arabidopsis thaliana GN=CPR30 PE=1 SV=2
trembl
ID B9GFB6
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s27010g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020763_020 0.0 - - hypothetical protein POPTR_0001s27010g [Populus trichocarpa]
2 Hb_011692_030 0.0010222482 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
3 Hb_003041_040 0.0356156664 - - PREDICTED: uncharacterized protein LOC104908276 [Beta vulgaris subsp. vulgaris]
4 Hb_062827_010 0.0504714832 - - -
5 Hb_004102_120 0.1450809437 - - -
6 Hb_003861_130 0.1895161792 - - -
7 Hb_001623_030 0.226446283 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_135978_010 0.25985812 - - hypothetical protein EUGRSUZ_J026621, partial [Eucalyptus grandis]
9 Hb_074197_060 0.295618776 - - PREDICTED: probable protein S-acyltransferase 14 isoform X1 [Populus euphratica]
10 Hb_010490_030 0.3079266628 - - -
11 Hb_000313_020 0.3246880046 - - Endoplasmic reticulum vesicle transporter protein isoform 2, partial [Theobroma cacao]
12 Hb_001205_010 0.3324879637 - - -
13 Hb_004631_120 0.3401375122 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000889_090 0.3424166708 - - isocitrate lyase, putative [Ricinus communis]
15 Hb_000092_160 0.3602952436 - - PREDICTED: 18 kDa seed maturation protein [Populus euphratica]
16 Hb_032299_050 0.3798161961 - - -
17 Hb_008725_160 0.3799838445 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005779_050 0.403740607 - - hypothetical protein JCGZ_14616 [Jatropha curcas]
19 Hb_001022_060 0.4136374755 - - PREDICTED: alpha/beta hydrolase domain-containing protein 11 [Jatropha curcas]
20 Hb_000007_050 0.4146532067 - - -

Gene co-expression network

sample Hb_020763_020 Hb_020763_020 Hb_011692_030 Hb_011692_030 Hb_020763_020--Hb_011692_030 Hb_003041_040 Hb_003041_040 Hb_020763_020--Hb_003041_040 Hb_062827_010 Hb_062827_010 Hb_020763_020--Hb_062827_010 Hb_004102_120 Hb_004102_120 Hb_020763_020--Hb_004102_120 Hb_003861_130 Hb_003861_130 Hb_020763_020--Hb_003861_130 Hb_001623_030 Hb_001623_030 Hb_020763_020--Hb_001623_030 Hb_011692_030--Hb_003041_040 Hb_011692_030--Hb_062827_010 Hb_011692_030--Hb_004102_120 Hb_011692_030--Hb_003861_130 Hb_011692_030--Hb_001623_030 Hb_003041_040--Hb_062827_010 Hb_003041_040--Hb_004102_120 Hb_003041_040--Hb_003861_130 Hb_003041_040--Hb_001623_030 Hb_062827_010--Hb_004102_120 Hb_062827_010--Hb_003861_130 Hb_062827_010--Hb_001623_030 Hb_004102_120--Hb_003861_130 Hb_004102_120--Hb_001623_030 Hb_135978_010 Hb_135978_010 Hb_004102_120--Hb_135978_010 Hb_003861_130--Hb_001623_030 Hb_003861_130--Hb_135978_010 Hb_001623_030--Hb_135978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0171287 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0391646 0 0 0 0

CAGE analysis