Hb_020805_010

Information

Type -
Description -
Location Contig20805: 16848-17432
Sequence    

Annotation

kegg
ID rcu:RCOM_1601910
description protein with unknown function
nr
ID XP_002510714.1
description protein with unknown function [Ricinus communis]
swissprot
ID Q9LM69
description RING-H2 finger protein ATL80 OS=Arabidopsis thaliana GN=ATL80 PE=2 SV=1
trembl
ID B9R8S1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1601910 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring-h2 finger protein atl80

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_010 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_000755_080 0.1348100095 - - hypothetical protein RCOM_1016710 [Ricinus communis]
3 Hb_000264_010 0.1364347254 - - PREDICTED: uncharacterized protein LOC105649505 [Jatropha curcas]
4 Hb_000720_070 0.1365837533 transcription factor TF Family: HSF hypothetical protein JCGZ_20639 [Jatropha curcas]
5 Hb_000261_520 0.138082799 - - PREDICTED: uncharacterized protein LOC105633192 [Jatropha curcas]
6 Hb_027420_050 0.1410578144 - - -
7 Hb_000375_030 0.1424038773 - - -
8 Hb_001901_080 0.1425213147 - - PREDICTED: xylose isomerase [Jatropha curcas]
9 Hb_000613_100 0.1438275904 - - PREDICTED: long chain acyl-CoA synthetase 8 [Jatropha curcas]
10 Hb_000366_190 0.1478775185 - - Phosphoenolpyruvate carboxylase, putative [Ricinus communis]
11 Hb_009119_030 0.1487197076 - - GMFP4 [Medicago truncatula]
12 Hb_000021_040 0.1487797091 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
13 Hb_017711_020 0.1526662984 - - PREDICTED: cysteine-rich repeat secretory protein 56 isoform X1 [Jatropha curcas]
14 Hb_002320_070 0.1542828659 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001489_070 0.1601302321 - - PREDICTED: uncharacterized protein LOC105649777 [Jatropha curcas]
16 Hb_188964_010 0.165009763 - - maintenance of killer 16 (mak16) protein, putative [Ricinus communis]
17 Hb_143243_010 0.1663566725 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
18 Hb_005228_080 0.1676553494 - - PREDICTED: cleavage and polyadenylation specificity factor subunit 3-I [Jatropha curcas]
19 Hb_004767_090 0.1682870927 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
20 Hb_000749_110 0.1684192031 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_010 Hb_020805_010 Hb_000755_080 Hb_000755_080 Hb_020805_010--Hb_000755_080 Hb_000264_010 Hb_000264_010 Hb_020805_010--Hb_000264_010 Hb_000720_070 Hb_000720_070 Hb_020805_010--Hb_000720_070 Hb_000261_520 Hb_000261_520 Hb_020805_010--Hb_000261_520 Hb_027420_050 Hb_027420_050 Hb_020805_010--Hb_027420_050 Hb_000375_030 Hb_000375_030 Hb_020805_010--Hb_000375_030 Hb_000755_080--Hb_000261_520 Hb_000365_140 Hb_000365_140 Hb_000755_080--Hb_000365_140 Hb_005895_040 Hb_005895_040 Hb_000755_080--Hb_005895_040 Hb_004656_060 Hb_004656_060 Hb_000755_080--Hb_004656_060 Hb_000755_080--Hb_000375_030 Hb_000640_220 Hb_000640_220 Hb_000755_080--Hb_000640_220 Hb_000021_040 Hb_000021_040 Hb_000264_010--Hb_000021_040 Hb_064903_010 Hb_064903_010 Hb_000264_010--Hb_064903_010 Hb_067193_010 Hb_067193_010 Hb_000264_010--Hb_067193_010 Hb_001301_090 Hb_001301_090 Hb_000264_010--Hb_001301_090 Hb_000101_350 Hb_000101_350 Hb_000264_010--Hb_000101_350 Hb_000951_110 Hb_000951_110 Hb_000264_010--Hb_000951_110 Hb_002965_030 Hb_002965_030 Hb_000720_070--Hb_002965_030 Hb_001534_070 Hb_001534_070 Hb_000720_070--Hb_001534_070 Hb_013394_060 Hb_013394_060 Hb_000720_070--Hb_013394_060 Hb_005725_020 Hb_005725_020 Hb_000720_070--Hb_005725_020 Hb_000720_070--Hb_027420_050 Hb_002999_060 Hb_002999_060 Hb_000720_070--Hb_002999_060 Hb_000261_520--Hb_000375_030 Hb_091384_010 Hb_091384_010 Hb_000261_520--Hb_091384_010 Hb_000261_520--Hb_000640_220 Hb_000261_520--Hb_005895_040 Hb_004376_030 Hb_004376_030 Hb_000261_520--Hb_004376_030 Hb_003710_040 Hb_003710_040 Hb_027420_050--Hb_003710_040 Hb_027420_050--Hb_000264_010 Hb_000640_200 Hb_000640_200 Hb_027420_050--Hb_000640_200 Hb_010584_010 Hb_010584_010 Hb_027420_050--Hb_010584_010 Hb_057451_010 Hb_057451_010 Hb_027420_050--Hb_057451_010 Hb_000375_030--Hb_000640_220 Hb_000375_030--Hb_005895_040 Hb_005408_020 Hb_005408_020 Hb_000375_030--Hb_005408_020 Hb_002477_130 Hb_002477_130 Hb_000375_030--Hb_002477_130 Hb_009151_020 Hb_009151_020 Hb_000375_030--Hb_009151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.2377 23.8333 11.5134 22.0095 67.2892 43.8658
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.33396 5.10998 10.3391 9.71561 4.92402

CAGE analysis