Hb_020805_020

Information

Type -
Description -
Location Contig20805: 23810-24714
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21509: 25160-27433
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_020 0.0 - - -
2 Hb_001433_010 0.0031985302 - - -
3 Hb_002240_030 0.0095089597 - - -
4 Hb_000046_130 0.013553032 - - Peroxidase 27 precursor, putative [Ricinus communis]
5 Hb_002392_060 0.0313733077 - - gag/pol protein [Bryonia dioica]
6 Hb_002928_080 0.0320149902 - - PREDICTED: pentatricopeptide repeat-containing protein At5g42310, mitochondrial [Jatropha curcas]
7 Hb_100821_010 0.0372755225 - - hypothetical protein JCGZ_01613 [Jatropha curcas]
8 Hb_000757_080 0.0490722355 - - vacuolar ATP synthase subunit G plant, putative [Ricinus communis]
9 Hb_181132_010 0.0525531871 - - -
10 Hb_003878_160 0.0670008328 - - conserved hypothetical protein [Ricinus communis]
11 Hb_008948_030 0.0710209751 - - hypothetical protein RCOM_0224470 [Ricinus communis]
12 Hb_003589_010 0.0731828323 - - -
13 Hb_002495_020 0.0759492924 - - hypothetical protein EUGRSUZ_A02403, partial [Eucalyptus grandis]
14 Hb_155103_010 0.0765261399 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_001488_050 0.099736017 transcription factor TF Family: NAC PREDICTED: NAC transcription factor 29-like [Jatropha curcas]
16 Hb_047735_010 0.1310989928 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
17 Hb_007809_070 0.2068692608 - - conserved hypothetical protein [Ricinus communis]
18 Hb_022790_030 0.2256832605 - - PREDICTED: probable calcium-binding protein CML18 [Jatropha curcas]
19 Hb_001948_010 0.2628903317 - - PREDICTED: cytochrome P450 76A1-like [Jatropha curcas]
20 Hb_003102_040 0.2800372616 - - PREDICTED: AT-hook motif nuclear-localized protein 23-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_020 Hb_020805_020 Hb_001433_010 Hb_001433_010 Hb_020805_020--Hb_001433_010 Hb_002240_030 Hb_002240_030 Hb_020805_020--Hb_002240_030 Hb_000046_130 Hb_000046_130 Hb_020805_020--Hb_000046_130 Hb_002392_060 Hb_002392_060 Hb_020805_020--Hb_002392_060 Hb_002928_080 Hb_002928_080 Hb_020805_020--Hb_002928_080 Hb_100821_010 Hb_100821_010 Hb_020805_020--Hb_100821_010 Hb_001433_010--Hb_002240_030 Hb_001433_010--Hb_000046_130 Hb_001433_010--Hb_002392_060 Hb_001433_010--Hb_002928_080 Hb_001433_010--Hb_100821_010 Hb_002240_030--Hb_000046_130 Hb_002240_030--Hb_002392_060 Hb_002240_030--Hb_002928_080 Hb_002240_030--Hb_100821_010 Hb_000046_130--Hb_002392_060 Hb_000046_130--Hb_002928_080 Hb_000046_130--Hb_100821_010 Hb_002392_060--Hb_002928_080 Hb_002392_060--Hb_100821_010 Hb_000757_080 Hb_000757_080 Hb_002392_060--Hb_000757_080 Hb_181132_010 Hb_181132_010 Hb_002392_060--Hb_181132_010 Hb_002928_080--Hb_100821_010 Hb_002928_080--Hb_000757_080 Hb_002928_080--Hb_181132_010 Hb_100821_010--Hb_000757_080 Hb_100821_010--Hb_181132_010 Hb_003878_160 Hb_003878_160 Hb_100821_010--Hb_003878_160 Hb_008948_030 Hb_008948_030 Hb_100821_010--Hb_008948_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.272318 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.166801 0

CAGE analysis