Hb_020805_040

Information

Type -
Description -
Location Contig20805: 36485-40118
Sequence    

Annotation

kegg
ID rcu:RCOM_1601890
description ribophorin, putative (EC:2.4.1.119)
nr
ID XP_012073604.1
description PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
swissprot
ID Q9SFX3
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A OS=Arabidopsis thaliana GN=OST1A PE=2 SV=1
trembl
ID A0A067KWY7
description Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 OS=Jatropha curcas GN=JCGZ_08051 PE=3 SV=1
Gene Ontology
ID GO:0016021
description dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1a-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_040 0.0 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1A [Jatropha curcas]
2 Hb_118283_010 0.1076226333 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000963_050 0.1293110349 - - PREDICTED: vegetative cell wall protein gp1-like [Jatropha curcas]
4 Hb_003540_120 0.1403810552 - - calmodulin binding protein, putative [Ricinus communis]
5 Hb_030685_010 0.1568555586 - - -
6 Hb_001823_090 0.1591449014 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000320_310 0.1698127953 - - PREDICTED: ankyrin repeat domain-containing protein 13C [Jatropha curcas]
8 Hb_150440_010 0.1706388705 - - -
9 Hb_001188_050 0.1706516889 - - conserved hypothetical protein [Ricinus communis]
10 Hb_005215_060 0.1723104162 - - PREDICTED: microtubule-associated protein RP/EB family member 1C [Jatropha curcas]
11 Hb_000544_200 0.172860318 - - PREDICTED: uncharacterized protein LOC105647171 [Jatropha curcas]
12 Hb_000023_110 0.1756969052 - - PREDICTED: probable methyltransferase PMT21 [Jatropha curcas]
13 Hb_064546_010 0.1761286859 - - PREDICTED: peroxidase 3 [Jatropha curcas]
14 Hb_003606_050 0.1763962472 - - PREDICTED: beta-galactosidase 10 [Jatropha curcas]
15 Hb_004586_040 0.1791681945 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
16 Hb_000270_100 0.1793742249 - - ATPase 4, plasma membrane-type -like protein [Gossypium arboreum]
17 Hb_005000_010 0.1844024276 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
18 Hb_000274_050 0.1846174924 - - Squalene monooxygenase, putative [Ricinus communis]
19 Hb_031284_030 0.1848504138 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000103_330 0.1859705055 - - PREDICTED: meiotic recombination protein DMC1 homolog isoform X1 [Glycine max]

Gene co-expression network

sample Hb_020805_040 Hb_020805_040 Hb_118283_010 Hb_118283_010 Hb_020805_040--Hb_118283_010 Hb_000963_050 Hb_000963_050 Hb_020805_040--Hb_000963_050 Hb_003540_120 Hb_003540_120 Hb_020805_040--Hb_003540_120 Hb_030685_010 Hb_030685_010 Hb_020805_040--Hb_030685_010 Hb_001823_090 Hb_001823_090 Hb_020805_040--Hb_001823_090 Hb_000320_310 Hb_000320_310 Hb_020805_040--Hb_000320_310 Hb_000544_200 Hb_000544_200 Hb_118283_010--Hb_000544_200 Hb_118283_010--Hb_000963_050 Hb_012286_060 Hb_012286_060 Hb_118283_010--Hb_012286_060 Hb_004586_040 Hb_004586_040 Hb_118283_010--Hb_004586_040 Hb_003688_010 Hb_003688_010 Hb_118283_010--Hb_003688_010 Hb_000274_050 Hb_000274_050 Hb_000963_050--Hb_000274_050 Hb_000963_050--Hb_012286_060 Hb_001188_050 Hb_001188_050 Hb_000963_050--Hb_001188_050 Hb_143629_120 Hb_143629_120 Hb_000963_050--Hb_143629_120 Hb_003540_120--Hb_030685_010 Hb_001597_030 Hb_001597_030 Hb_003540_120--Hb_001597_030 Hb_003606_050 Hb_003606_050 Hb_003540_120--Hb_003606_050 Hb_003540_120--Hb_001188_050 Hb_003540_120--Hb_001823_090 Hb_002681_120 Hb_002681_120 Hb_003540_120--Hb_002681_120 Hb_000093_090 Hb_000093_090 Hb_030685_010--Hb_000093_090 Hb_003728_110 Hb_003728_110 Hb_030685_010--Hb_003728_110 Hb_030685_010--Hb_001188_050 Hb_003055_080 Hb_003055_080 Hb_030685_010--Hb_003055_080 Hb_002749_040 Hb_002749_040 Hb_030685_010--Hb_002749_040 Hb_000735_060 Hb_000735_060 Hb_001823_090--Hb_000735_060 Hb_001823_090--Hb_001597_030 Hb_001823_090--Hb_003606_050 Hb_001863_010 Hb_001863_010 Hb_001823_090--Hb_001863_010 Hb_000834_220 Hb_000834_220 Hb_001823_090--Hb_000834_220 Hb_005000_010 Hb_005000_010 Hb_000320_310--Hb_005000_010 Hb_004218_200 Hb_004218_200 Hb_000320_310--Hb_004218_200 Hb_010863_030 Hb_010863_030 Hb_000320_310--Hb_010863_030 Hb_002897_010 Hb_002897_010 Hb_000320_310--Hb_002897_010 Hb_001123_310 Hb_001123_310 Hb_000320_310--Hb_001123_310 Hb_001195_550 Hb_001195_550 Hb_000320_310--Hb_001195_550
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.066407 0.0733474 0.786152 1.16706 0.0364139 0.17954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0288386 0.0453778 0 0.226206 0.380791

CAGE analysis