Hb_020805_090

Information

Type -
Description -
Location Contig20805: 65666-68600
Sequence    

Annotation

kegg
ID rcu:RCOM_1601720
description glyceraldehyde 3-phosphate dehydrogenase, putative (EC:1.2.1.13)
nr
ID XP_002510706.1
description glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
swissprot
ID P25857
description Glyceraldehyde-3-phosphate dehydrogenase GAPB, chloroplastic OS=Arabidopsis thaliana GN=GAPB PE=1 SV=2
trembl
ID B9R8R3
description Glyceraldehyde-3-phosphate dehydrogenase OS=Ricinus communis GN=RCOM_1601720 PE=3 SV=1
Gene Ontology
ID GO:0009535
description glyceraldehyde-3-phosphate dehydrogenase chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21522: 61957-64987 , PASA_asmbl_21523: 65674-68401
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_090 0.0 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
2 Hb_004855_030 0.050503835 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
3 Hb_000349_150 0.0543169228 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
4 Hb_003208_010 0.0566058121 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
5 Hb_000977_260 0.0591581361 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
6 Hb_011689_070 0.0602566474 - - PREDICTED: pyruvate, phosphate dikinase, chloroplastic [Jatropha curcas]
7 Hb_003251_010 0.0608606724 - - hypothetical protein MIMGU_mgv1a025126mg [Erythranthe guttata]
8 Hb_000398_110 0.0624035949 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 4-like [Populus euphratica]
9 Hb_000282_110 0.0624687519 transcription factor TF Family: C2C2-GATA hypothetical protein POPTR_0006s24560g [Populus trichocarpa]
10 Hb_005736_030 0.0635888302 - - thioredoxin m(mitochondrial)-type, putative [Ricinus communis]
11 Hb_000083_010 0.0659173184 - - -
12 Hb_013818_020 0.0703348231 - - hypothetical protein POPTR_0005s21070g [Populus trichocarpa]
13 Hb_000893_040 0.0724010986 transcription factor TF Family: bHLH hypothetical protein POPTR_0011s05320g [Populus trichocarpa]
14 Hb_027751_070 0.0760397229 transcription factor TF Family: C2C2-CO-like transcription factor, putative [Ricinus communis]
15 Hb_004150_020 0.0770998177 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
16 Hb_001951_040 0.0776054358 - - PREDICTED: probable starch synthase 4, chloroplastic/amyloplastic isoform X1 [Jatropha curcas]
17 Hb_000762_050 0.0795445648 - - PREDICTED: carbonic anhydrase, chloroplastic-like [Jatropha curcas]
18 Hb_007416_250 0.0800918809 - - -
19 Hb_004116_030 0.0800957274 - - Chlorophyll a-b binding CP29.3, chloroplastic -like protein [Gossypium arboreum]
20 Hb_008489_030 0.0820638773 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]

Gene co-expression network

sample Hb_020805_090 Hb_020805_090 Hb_004855_030 Hb_004855_030 Hb_020805_090--Hb_004855_030 Hb_000349_150 Hb_000349_150 Hb_020805_090--Hb_000349_150 Hb_003208_010 Hb_003208_010 Hb_020805_090--Hb_003208_010 Hb_000977_260 Hb_000977_260 Hb_020805_090--Hb_000977_260 Hb_011689_070 Hb_011689_070 Hb_020805_090--Hb_011689_070 Hb_003251_010 Hb_003251_010 Hb_020805_090--Hb_003251_010 Hb_004855_030--Hb_000349_150 Hb_004855_030--Hb_003251_010 Hb_004855_030--Hb_000977_260 Hb_004855_030--Hb_003208_010 Hb_000893_040 Hb_000893_040 Hb_004855_030--Hb_000893_040 Hb_000922_110 Hb_000922_110 Hb_000349_150--Hb_000922_110 Hb_000349_150--Hb_011689_070 Hb_004150_020 Hb_004150_020 Hb_000349_150--Hb_004150_020 Hb_000349_150--Hb_000977_260 Hb_003208_010--Hb_003251_010 Hb_003208_010--Hb_000977_260 Hb_000282_110 Hb_000282_110 Hb_003208_010--Hb_000282_110 Hb_000398_110 Hb_000398_110 Hb_003208_010--Hb_000398_110 Hb_013818_020 Hb_013818_020 Hb_003208_010--Hb_013818_020 Hb_003208_010--Hb_000893_040 Hb_000977_260--Hb_003251_010 Hb_000977_260--Hb_000893_040 Hb_000977_260--Hb_000398_110 Hb_008489_030 Hb_008489_030 Hb_000977_260--Hb_008489_030 Hb_020859_010 Hb_020859_010 Hb_000977_260--Hb_020859_010 Hb_011689_070--Hb_000922_110 Hb_011689_070--Hb_004855_030 Hb_003732_030 Hb_003732_030 Hb_011689_070--Hb_003732_030 Hb_011689_070--Hb_004150_020 Hb_003251_010--Hb_000893_040 Hb_003251_010--Hb_000282_110 Hb_003251_010--Hb_008489_030 Hb_003251_010--Hb_000398_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.104131 3.1165 90.8688 40.1307 0.11026 0.102359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.449187 0.436569 0 0.157376 581.126

CAGE analysis