Hb_020805_110

Information

Type -
Description -
Location Contig20805: 76134-78428
Sequence    

Annotation

kegg
ID rcu:RCOM_1601700
description Glucan endo-1,3-beta-glucosidase precursor, putative (EC:3.2.1.39)
nr
ID XP_012073613.1
description PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
swissprot
ID Q9FJU9
description Glucan endo-1,3-beta-glucosidase 13 OS=Arabidopsis thaliana GN=At5g56590 PE=1 SV=1
trembl
ID A0A067KKL9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08057 PE=3 SV=1
Gene Ontology
ID GO:0042973
description glucan endo- -beta-glucosidase 12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21525: 76129-78034
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_110 0.0 - - PREDICTED: glucan endo-1,3-beta-glucosidase 12 [Jatropha curcas]
2 Hb_000676_380 0.0873445868 - - cytochrome P450 family protein [Populus trichocarpa]
3 Hb_009711_040 0.088901136 - - PREDICTED: uncharacterized protein LOC105647789 [Jatropha curcas]
4 Hb_004875_040 0.0912600032 - - PREDICTED: uncharacterized protein LOC105645797 [Jatropha curcas]
5 Hb_000306_050 0.0924565487 transcription factor TF Family: PLATZ protein with unknown function [Ricinus communis]
6 Hb_003090_230 0.0972825237 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001856_150 0.1039453758 - - -
8 Hb_003171_070 0.1050252656 - - PREDICTED: protein TRANSPARENT TESTA 12-like [Citrus sinensis]
9 Hb_000032_330 0.1105443472 - - conserved hypothetical protein [Ricinus communis]
10 Hb_148817_010 0.1127202187 - - PREDICTED: CASP-like protein 1D1 [Jatropha curcas]
11 Hb_001596_030 0.1138866284 - - PREDICTED: uncharacterized protein LOC105141672 [Populus euphratica]
12 Hb_000836_250 0.1147882051 - - hypothetical protein VITISV_022299 [Vitis vinifera]
13 Hb_006314_020 0.1173351793 - - PREDICTED: GABA transporter 1-like [Jatropha curcas]
14 Hb_001522_050 0.1208450309 - - PREDICTED: CLAVATA3/ESR (CLE)-related protein 25 [Jatropha curcas]
15 Hb_014115_010 0.1262533347 - - UDP-glucosyltransferase, putative [Ricinus communis]
16 Hb_000417_350 0.1275441303 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000098_210 0.1320250331 - - PREDICTED: uncharacterized protein LOC105633345 [Jatropha curcas]
18 Hb_000230_160 0.1344016498 - - PREDICTED: uncharacterized protein LOC105631858 isoform X1 [Jatropha curcas]
19 Hb_000081_030 0.1367381748 - - BnaC09g05810D [Brassica napus]
20 Hb_095532_010 0.1381078543 - - BnaC05g27570D [Brassica napus]

Gene co-expression network

sample Hb_020805_110 Hb_020805_110 Hb_000676_380 Hb_000676_380 Hb_020805_110--Hb_000676_380 Hb_009711_040 Hb_009711_040 Hb_020805_110--Hb_009711_040 Hb_004875_040 Hb_004875_040 Hb_020805_110--Hb_004875_040 Hb_000306_050 Hb_000306_050 Hb_020805_110--Hb_000306_050 Hb_003090_230 Hb_003090_230 Hb_020805_110--Hb_003090_230 Hb_001856_150 Hb_001856_150 Hb_020805_110--Hb_001856_150 Hb_000676_380--Hb_003090_230 Hb_003171_070 Hb_003171_070 Hb_000676_380--Hb_003171_070 Hb_000676_380--Hb_001856_150 Hb_000676_380--Hb_004875_040 Hb_000676_380--Hb_009711_040 Hb_000417_350 Hb_000417_350 Hb_009711_040--Hb_000417_350 Hb_009711_040--Hb_003171_070 Hb_009711_040--Hb_000306_050 Hb_009711_040--Hb_003090_230 Hb_148817_010 Hb_148817_010 Hb_004875_040--Hb_148817_010 Hb_004875_040--Hb_001856_150 Hb_000098_210 Hb_000098_210 Hb_004875_040--Hb_000098_210 Hb_006314_020 Hb_006314_020 Hb_004875_040--Hb_006314_020 Hb_014115_010 Hb_014115_010 Hb_000306_050--Hb_014115_010 Hb_001596_030 Hb_001596_030 Hb_000306_050--Hb_001596_030 Hb_000836_250 Hb_000836_250 Hb_000306_050--Hb_000836_250 Hb_000297_220 Hb_000297_220 Hb_000306_050--Hb_000297_220 Hb_021418_010 Hb_021418_010 Hb_003090_230--Hb_021418_010 Hb_003090_230--Hb_004875_040 Hb_003090_230--Hb_001596_030 Hb_001856_150--Hb_006314_020 Hb_000230_160 Hb_000230_160 Hb_001856_150--Hb_000230_160 Hb_003435_070 Hb_003435_070 Hb_001856_150--Hb_003435_070 Hb_000081_030 Hb_000081_030 Hb_001856_150--Hb_000081_030 Hb_001856_150--Hb_003171_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.221744 4.90151 1.59589 27.0288 0.0437419 0.0256234
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0203758 0.0641314 0.0304753 27.2329 0.169854

CAGE analysis