Hb_020805_140

Information

Type -
Description -
Location Contig20805: 115575-117335
Sequence    

Annotation

kegg
ID rcu:RCOM_1601660
description hypothetical protein
nr
ID XP_012073622.1
description PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
swissprot
ID Q9FII1
description F-box/kelch-repeat protein At5g42360 OS=Arabidopsis thaliana GN=At5g42360 PE=2 SV=1
trembl
ID A0A067KWZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08061 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21530: 114732-117578 , PASA_asmbl_21531: 114630-117578
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_140 0.0 - - PREDICTED: F-box/kelch-repeat protein At5g42360-like [Jatropha curcas]
2 Hb_026527_010 0.1368563841 - - PREDICTED: caffeoylshikimate esterase-like [Populus euphratica]
3 Hb_000107_350 0.1515546686 - - PREDICTED: uncharacterized protein LOC105635576 [Jatropha curcas]
4 Hb_069355_010 0.154286457 - - NBS-LRR resistance protein RGH2 [Manihot esculenta]
5 Hb_025466_020 0.1546336738 - - tubulin beta-6 [Brassica oleracea var. italica]
6 Hb_000345_080 0.1548559488 - - PREDICTED: protein RALF-like 33 [Jatropha curcas]
7 Hb_008699_030 0.1594629125 - - hypothetical protein CISIN_1g017963mg [Citrus sinensis]
8 Hb_001369_630 0.1632992089 - - PREDICTED: UDP-glucuronate 4-epimerase 3-like [Jatropha curcas]
9 Hb_002781_050 0.1676783137 - - cytochrome B5 isoform 1, putative [Ricinus communis]
10 Hb_007416_100 0.168219923 - - PREDICTED: probable xyloglucan glycosyltransferase 5 [Jatropha curcas]
11 Hb_004055_020 0.168918204 - - PREDICTED: uncharacterized protein LOC105631433 [Jatropha curcas]
12 Hb_001989_100 0.1698959623 - - PREDICTED: uncharacterized protein LOC105636214 [Jatropha curcas]
13 Hb_000210_100 0.1717738215 - - pepsin A, putative [Ricinus communis]
14 Hb_000260_280 0.1754560376 - - auxin:hydrogen symporter, putative [Ricinus communis]
15 Hb_015675_030 0.1797832077 - - PREDICTED: UMP-CMP kinase 3 isoform X2 [Jatropha curcas]
16 Hb_000696_070 0.1802585268 - - PREDICTED: aspartic proteinase-like protein 1 [Jatropha curcas]
17 Hb_032143_020 0.1806495115 - - hypothetical protein POPTR_0009s06310g [Populus trichocarpa]
18 Hb_000671_130 0.1837393984 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
19 Hb_003304_110 0.1850949716 - - conserved hypothetical protein [Ricinus communis]
20 Hb_027073_010 0.1877457202 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]

Gene co-expression network

sample Hb_020805_140 Hb_020805_140 Hb_026527_010 Hb_026527_010 Hb_020805_140--Hb_026527_010 Hb_000107_350 Hb_000107_350 Hb_020805_140--Hb_000107_350 Hb_069355_010 Hb_069355_010 Hb_020805_140--Hb_069355_010 Hb_025466_020 Hb_025466_020 Hb_020805_140--Hb_025466_020 Hb_000345_080 Hb_000345_080 Hb_020805_140--Hb_000345_080 Hb_008699_030 Hb_008699_030 Hb_020805_140--Hb_008699_030 Hb_001329_180 Hb_001329_180 Hb_026527_010--Hb_001329_180 Hb_000696_070 Hb_000696_070 Hb_026527_010--Hb_000696_070 Hb_003470_110 Hb_003470_110 Hb_026527_010--Hb_003470_110 Hb_002701_090 Hb_002701_090 Hb_026527_010--Hb_002701_090 Hb_002781_050 Hb_002781_050 Hb_026527_010--Hb_002781_050 Hb_000649_040 Hb_000649_040 Hb_000107_350--Hb_000649_040 Hb_000077_310 Hb_000077_310 Hb_000107_350--Hb_000077_310 Hb_011310_040 Hb_011310_040 Hb_000107_350--Hb_011310_040 Hb_000808_150 Hb_000808_150 Hb_000107_350--Hb_000808_150 Hb_003226_250 Hb_003226_250 Hb_000107_350--Hb_003226_250 Hb_004055_020 Hb_004055_020 Hb_000107_350--Hb_004055_020 Hb_000300_520 Hb_000300_520 Hb_069355_010--Hb_000300_520 Hb_000210_100 Hb_000210_100 Hb_069355_010--Hb_000210_100 Hb_001481_130 Hb_001481_130 Hb_069355_010--Hb_001481_130 Hb_001289_020 Hb_001289_020 Hb_069355_010--Hb_001289_020 Hb_069355_010--Hb_026527_010 Hb_025466_010 Hb_025466_010 Hb_025466_020--Hb_025466_010 Hb_006903_030 Hb_006903_030 Hb_025466_020--Hb_006903_030 Hb_048476_060 Hb_048476_060 Hb_025466_020--Hb_048476_060 Hb_021409_080 Hb_021409_080 Hb_025466_020--Hb_021409_080 Hb_001454_100 Hb_001454_100 Hb_025466_020--Hb_001454_100 Hb_111985_110 Hb_111985_110 Hb_025466_020--Hb_111985_110 Hb_000742_030 Hb_000742_030 Hb_000345_080--Hb_000742_030 Hb_001584_240 Hb_001584_240 Hb_000345_080--Hb_001584_240 Hb_000175_260 Hb_000175_260 Hb_000345_080--Hb_000175_260 Hb_000294_050 Hb_000294_050 Hb_000345_080--Hb_000294_050 Hb_003304_110 Hb_003304_110 Hb_000345_080--Hb_003304_110 Hb_015675_030 Hb_015675_030 Hb_008699_030--Hb_015675_030 Hb_000240_030 Hb_000240_030 Hb_008699_030--Hb_000240_030 Hb_001195_070 Hb_001195_070 Hb_008699_030--Hb_001195_070 Hb_003207_020 Hb_003207_020 Hb_008699_030--Hb_003207_020 Hb_000946_110 Hb_000946_110 Hb_008699_030--Hb_000946_110 Hb_001124_100 Hb_001124_100 Hb_008699_030--Hb_001124_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.49169 1.8464 9.48903 56.068 0.822307 0.920701
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.7892 8.33132 8.23759 9.36965 21.9738

CAGE analysis