Hb_020805_170

Information

Type -
Description -
Location Contig20805: 124153-126042
Sequence    

Annotation

kegg
ID cic:CICLE_v10011634mg
description hypothetical protein
nr
ID XP_012073628.1
description PREDICTED: F-box protein CPR30-like [Jatropha curcas]
swissprot
ID Q9SFC7
description F-box protein At3g07870 OS=Arabidopsis thaliana GN=At3g07870 PE=2 SV=1
trembl
ID A0A067KKZ4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08063 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21536: 124416-125970
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020805_170 0.0 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
2 Hb_008066_070 0.1050474997 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
3 Hb_000140_410 0.124173052 - - PREDICTED: uncharacterized protein At5g41620 isoform X1 [Jatropha curcas]
4 Hb_001114_070 0.1417308916 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g58400 [Jatropha curcas]
5 Hb_000022_180 0.1424085021 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
6 Hb_005147_040 0.1445113004 - - PREDICTED: uncharacterized protein LOC105629674 [Jatropha curcas]
7 Hb_000905_170 0.1507092711 desease resistance Gene Name: NB-ARC hypothetical protein POPTR_0004s20690g [Populus trichocarpa]
8 Hb_004108_170 0.1513460663 - - conserved hypothetical protein [Ricinus communis]
9 Hb_007676_020 0.1545146127 - - PREDICTED: putative E3 ubiquitin-protein ligase LIN-1 isoform X1 [Jatropha curcas]
10 Hb_001828_020 0.1554558493 - - hypothetical protein CISIN_1g010132mg [Citrus sinensis]
11 Hb_000645_240 0.1594577728 - - AMP dependent ligase, putative [Ricinus communis]
12 Hb_000866_090 0.1599005063 - - PREDICTED: U-box domain-containing protein 33-like isoform X3 [Jatropha curcas]
13 Hb_001288_070 0.1671397247 - - PREDICTED: aminopeptidase M1-like [Jatropha curcas]
14 Hb_000002_270 0.1681784322 - - hypothetical protein VITISV_043897 [Vitis vinifera]
15 Hb_003623_070 0.1778543528 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_011512_130 0.1784182322 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
17 Hb_003125_020 0.1791365797 - - AMP-activated protein kinase, gamma regulatory subunit, putative [Ricinus communis]
18 Hb_006573_300 0.1792328965 - - ATP binding protein, putative [Ricinus communis]
19 Hb_011930_070 0.1795722894 - - PREDICTED: probable AMP deaminase [Jatropha curcas]
20 Hb_008511_100 0.1795780786 - - hypothetical protein POPTR_0009s11860g [Populus trichocarpa]

Gene co-expression network

sample Hb_020805_170 Hb_020805_170 Hb_008066_070 Hb_008066_070 Hb_020805_170--Hb_008066_070 Hb_000140_410 Hb_000140_410 Hb_020805_170--Hb_000140_410 Hb_001114_070 Hb_001114_070 Hb_020805_170--Hb_001114_070 Hb_000022_180 Hb_000022_180 Hb_020805_170--Hb_000022_180 Hb_005147_040 Hb_005147_040 Hb_020805_170--Hb_005147_040 Hb_000905_170 Hb_000905_170 Hb_020805_170--Hb_000905_170 Hb_011512_130 Hb_011512_130 Hb_008066_070--Hb_011512_130 Hb_008066_070--Hb_000140_410 Hb_008066_070--Hb_000905_170 Hb_007676_020 Hb_007676_020 Hb_008066_070--Hb_007676_020 Hb_000856_180 Hb_000856_180 Hb_008066_070--Hb_000856_180 Hb_001269_690 Hb_001269_690 Hb_000140_410--Hb_001269_690 Hb_000140_410--Hb_000905_170 Hb_001529_050 Hb_001529_050 Hb_000140_410--Hb_001529_050 Hb_003623_070 Hb_003623_070 Hb_000140_410--Hb_003623_070 Hb_006573_300 Hb_006573_300 Hb_001114_070--Hb_006573_300 Hb_001114_070--Hb_007676_020 Hb_031862_040 Hb_031862_040 Hb_001114_070--Hb_031862_040 Hb_000853_060 Hb_000853_060 Hb_001114_070--Hb_000853_060 Hb_012098_170 Hb_012098_170 Hb_001114_070--Hb_012098_170 Hb_000645_240 Hb_000645_240 Hb_000022_180--Hb_000645_240 Hb_000789_240 Hb_000789_240 Hb_000022_180--Hb_000789_240 Hb_011861_080 Hb_011861_080 Hb_000022_180--Hb_011861_080 Hb_000866_370 Hb_000866_370 Hb_000022_180--Hb_000866_370 Hb_000866_090 Hb_000866_090 Hb_000022_180--Hb_000866_090 Hb_004108_170 Hb_004108_170 Hb_000022_180--Hb_004108_170 Hb_000010_350 Hb_000010_350 Hb_005147_040--Hb_000010_350 Hb_000062_080 Hb_000062_080 Hb_005147_040--Hb_000062_080 Hb_001863_150 Hb_001863_150 Hb_005147_040--Hb_001863_150 Hb_000107_440 Hb_000107_440 Hb_005147_040--Hb_000107_440 Hb_005147_040--Hb_000645_240 Hb_000227_060 Hb_000227_060 Hb_000905_170--Hb_000227_060 Hb_049436_010 Hb_049436_010 Hb_000905_170--Hb_049436_010 Hb_000905_170--Hb_000856_180 Hb_011930_070 Hb_011930_070 Hb_000905_170--Hb_011930_070 Hb_003071_020 Hb_003071_020 Hb_000905_170--Hb_003071_020 Hb_000009_330 Hb_000009_330 Hb_000905_170--Hb_000009_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16523 9.63802 0.979101 2.49707 0.772432 1.74716
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.93901 1.52554 1.45873 7.37786 0.78919

CAGE analysis