Hb_020831_030

Information

Type -
Description -
Location Contig20831: 10679-47272
Sequence    

Annotation

kegg
ID rcu:RCOM_1300190
description hypothetical protein
nr
ID XP_002519403.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q54GS1
description Protein CLEC16A homolog OS=Dictyostelium discoideum GN=DDB_G0289943 PE=3 SV=1
trembl
ID B9S084
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1300190 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21571: 10630-12656 , PASA_asmbl_21572: 12952-17849 , PASA_asmbl_21574: 18061-43811 , PASA_asmbl_21575: 18089-25773
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020831_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_001195_530 0.0304136894 - - conserved hypothetical protein [Ricinus communis]
3 Hb_003640_040 0.0451840526 - - PREDICTED: uncharacterized protein LOC105647348 [Jatropha curcas]
4 Hb_002056_090 0.0495104279 transcription factor TF Family: GNAT PREDICTED: probable acetyltransferase NATA1-like [Jatropha curcas]
5 Hb_000049_260 0.0585047087 - - WD-repeat protein, putative [Ricinus communis]
6 Hb_004195_200 0.0601370514 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
7 Hb_013399_100 0.0613661311 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000614_210 0.0622681013 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-1-like isoform X1 [Jatropha curcas]
9 Hb_105105_010 0.0649944031 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
10 Hb_002876_130 0.065521796 - - PREDICTED: uncharacterized protein LOC105637143 [Jatropha curcas]
11 Hb_000861_080 0.0658747019 - - PREDICTED: protein ELC-like [Jatropha curcas]
12 Hb_000915_180 0.0669998584 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Pyrus x bretschneideri]
13 Hb_001089_050 0.0674510599 transcription factor TF Family: ARID PREDICTED: AT-rich interactive domain-containing protein 4 [Jatropha curcas]
14 Hb_000087_060 0.0678527801 - - protein transporter, putative [Ricinus communis]
15 Hb_000479_220 0.0683787698 - - PREDICTED: uncharacterized protein LOC105644125 [Jatropha curcas]
16 Hb_003464_090 0.0687542303 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
17 Hb_000289_040 0.0688851318 - - Poly(A) polymerase alpha, putative [Ricinus communis]
18 Hb_007163_120 0.0689674591 - - PREDICTED: COMPASS-like H3K4 histone methylase component WDR5A [Jatropha curcas]
19 Hb_002078_110 0.0696007297 - - PREDICTED: nuclear pore complex protein NUP54 [Jatropha curcas]
20 Hb_000009_500 0.0701215156 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]

Gene co-expression network

sample Hb_020831_030 Hb_020831_030 Hb_001195_530 Hb_001195_530 Hb_020831_030--Hb_001195_530 Hb_003640_040 Hb_003640_040 Hb_020831_030--Hb_003640_040 Hb_002056_090 Hb_002056_090 Hb_020831_030--Hb_002056_090 Hb_000049_260 Hb_000049_260 Hb_020831_030--Hb_000049_260 Hb_004195_200 Hb_004195_200 Hb_020831_030--Hb_004195_200 Hb_013399_100 Hb_013399_100 Hb_020831_030--Hb_013399_100 Hb_105105_010 Hb_105105_010 Hb_001195_530--Hb_105105_010 Hb_001195_530--Hb_003640_040 Hb_001408_140 Hb_001408_140 Hb_001195_530--Hb_001408_140 Hb_001195_530--Hb_002056_090 Hb_002205_250 Hb_002205_250 Hb_001195_530--Hb_002205_250 Hb_003640_040--Hb_002056_090 Hb_003640_040--Hb_004195_200 Hb_000680_090 Hb_000680_090 Hb_003640_040--Hb_000680_090 Hb_000070_080 Hb_000070_080 Hb_003640_040--Hb_000070_080 Hb_002056_090--Hb_105105_010 Hb_000087_060 Hb_000087_060 Hb_002056_090--Hb_000087_060 Hb_005137_040 Hb_005137_040 Hb_002056_090--Hb_005137_040 Hb_002818_030 Hb_002818_030 Hb_000049_260--Hb_002818_030 Hb_002234_170 Hb_002234_170 Hb_000049_260--Hb_002234_170 Hb_000049_260--Hb_001195_530 Hb_002798_070 Hb_002798_070 Hb_000049_260--Hb_002798_070 Hb_000049_260--Hb_013399_100 Hb_002375_010 Hb_002375_010 Hb_004195_200--Hb_002375_010 Hb_001104_160 Hb_001104_160 Hb_004195_200--Hb_001104_160 Hb_007576_110 Hb_007576_110 Hb_004195_200--Hb_007576_110 Hb_000366_120 Hb_000366_120 Hb_004195_200--Hb_000366_120 Hb_001409_020 Hb_001409_020 Hb_013399_100--Hb_001409_020 Hb_000060_090 Hb_000060_090 Hb_013399_100--Hb_000060_090 Hb_105105_020 Hb_105105_020 Hb_013399_100--Hb_105105_020 Hb_003504_030 Hb_003504_030 Hb_013399_100--Hb_003504_030 Hb_000780_230 Hb_000780_230 Hb_013399_100--Hb_000780_230 Hb_010618_010 Hb_010618_010 Hb_013399_100--Hb_010618_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.30386 9.34091 6.34565 6.43554 6.96628 7.56251
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.48134 5.64701 6.63676 5.4437 4.61013

CAGE analysis