Hb_020902_010

Information

Type -
Description -
Location Contig20902: 27042-28816
Sequence    

Annotation

kegg
ID rcu:RCOM_1032840
description hypothetical protein
nr
ID XP_010254619.1
description PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
swissprot
ID -
description -
trembl
ID A0A067K2I7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16680 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21623: 27075-27326 , PASA_asmbl_21625: 27960-28785
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020902_010 0.0 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
2 Hb_036034_010 0.0931049007 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000878_130 0.0937425233 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000307_200 0.1042272686 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
5 Hb_012286_050 0.1057221193 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_014568_030 0.1096684543 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
7 Hb_004735_010 0.1102214838 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
8 Hb_003638_140 0.1109845506 - - protein binding protein, putative [Ricinus communis]
9 Hb_024714_030 0.1119626041 - - PREDICTED: sm-like protein LSM4 [Jatropha curcas]
10 Hb_006455_090 0.1127329072 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
11 Hb_000671_100 0.1129739181 - - hypothetical protein POPTR_0017s06410g [Populus trichocarpa]
12 Hb_000749_150 0.1134993218 - - -
13 Hb_041091_010 0.1182501802 - - PREDICTED: pentatricopeptide repeat-containing protein At1g05670, mitochondrial [Jatropha curcas]
14 Hb_000803_150 0.1183276159 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
15 Hb_001902_050 0.1210700894 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
16 Hb_006455_110 0.1221853301 - - bromodomain-containing protein, putative [Ricinus communis]
17 Hb_004852_030 0.1225454963 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
18 Hb_185467_020 0.1235347196 - - Cucumisin precursor, putative [Ricinus communis]
19 Hb_000442_160 0.1244232657 - - alpha-soluble nsf attachment protein, putative [Ricinus communis]
20 Hb_000077_050 0.1247705666 - - PREDICTED: elongation factor G-1, mitochondrial isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_020902_010 Hb_020902_010 Hb_036034_010 Hb_036034_010 Hb_020902_010--Hb_036034_010 Hb_000878_130 Hb_000878_130 Hb_020902_010--Hb_000878_130 Hb_000307_200 Hb_000307_200 Hb_020902_010--Hb_000307_200 Hb_012286_050 Hb_012286_050 Hb_020902_010--Hb_012286_050 Hb_014568_030 Hb_014568_030 Hb_020902_010--Hb_014568_030 Hb_004735_010 Hb_004735_010 Hb_020902_010--Hb_004735_010 Hb_000077_050 Hb_000077_050 Hb_036034_010--Hb_000077_050 Hb_036034_010--Hb_000307_200 Hb_036034_010--Hb_012286_050 Hb_036034_010--Hb_014568_030 Hb_041091_010 Hb_041091_010 Hb_036034_010--Hb_041091_010 Hb_000035_120 Hb_000035_120 Hb_000878_130--Hb_000035_120 Hb_010298_010 Hb_010298_010 Hb_000878_130--Hb_010298_010 Hb_000878_130--Hb_004735_010 Hb_006455_090 Hb_006455_090 Hb_000878_130--Hb_006455_090 Hb_003638_140 Hb_003638_140 Hb_000878_130--Hb_003638_140 Hb_003434_060 Hb_003434_060 Hb_000307_200--Hb_003434_060 Hb_002046_040 Hb_002046_040 Hb_000307_200--Hb_002046_040 Hb_000307_200--Hb_000077_050 Hb_028900_020 Hb_028900_020 Hb_000307_200--Hb_028900_020 Hb_000390_060 Hb_000390_060 Hb_000307_200--Hb_000390_060 Hb_000045_070 Hb_000045_070 Hb_000307_200--Hb_000045_070 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_014568_030--Hb_000077_050 Hb_001584_110 Hb_001584_110 Hb_014568_030--Hb_001584_110 Hb_002014_080 Hb_002014_080 Hb_014568_030--Hb_002014_080 Hb_024714_030 Hb_024714_030 Hb_014568_030--Hb_024714_030 Hb_001855_010 Hb_001855_010 Hb_014568_030--Hb_001855_010 Hb_011282_030 Hb_011282_030 Hb_014568_030--Hb_011282_030 Hb_000700_090 Hb_000700_090 Hb_004735_010--Hb_000700_090 Hb_001902_050 Hb_001902_050 Hb_004735_010--Hb_001902_050 Hb_006602_020 Hb_006602_020 Hb_004735_010--Hb_006602_020 Hb_006602_010 Hb_006602_010 Hb_004735_010--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.08652 1.27928 0.660696 1.43021 4.32319 12.2845
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.69928 3.55689 4.57585 1.7605 0.830541

CAGE analysis