Hb_020902_020

Information

Type -
Description -
Location Contig20902: 33050-34015
Sequence    

Annotation

kegg
ID tcc:TCM_038592
description hypothetical protein
nr
ID KDP34249.1
description hypothetical protein JCGZ_07820 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KR26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07820 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020902_020 0.0 - - hypothetical protein JCGZ_07820 [Jatropha curcas]
2 Hb_001775_050 0.0849139082 - - ribosome-inactivating protein cucurmosin-like [Jatropha curcas]
3 Hb_001609_080 0.0925314214 - - hypothetical protein POPTR_0017s05660g [Populus trichocarpa]
4 Hb_008080_040 0.1001792735 - - hypothetical protein EUGRSUZ_D00834 [Eucalyptus grandis]
5 Hb_005653_100 0.1029184672 - - hypothetical protein POPTR_0004s19580g [Populus trichocarpa]
6 Hb_000407_110 0.1114217873 - - ripening-induced ACC oxidase [Carica papaya]
7 Hb_001454_300 0.1250846187 - - nucleotide binding protein, putative [Ricinus communis]
8 Hb_001369_320 0.1256164291 - - PREDICTED: dynein light chain, cytoplasmic-like [Jatropha curcas]
9 Hb_000327_300 0.1355781422 - - PREDICTED: ABC transporter G family member 6-like [Jatropha curcas]
10 Hb_000288_140 0.1360403598 - - PREDICTED: putative cysteine-rich receptor-like protein kinase 35 [Jatropha curcas]
11 Hb_006919_010 0.1368644389 - - PREDICTED: putative wall-associated receptor kinase-like 16 [Vitis vinifera]
12 Hb_002435_080 0.1402765937 - - conserved hypothetical protein [Ricinus communis]
13 Hb_129204_050 0.1416202552 transcription factor TF Family: MYB-related PREDICTED: myb-related protein 330-like [Prunus mume]
14 Hb_000057_160 0.1427078281 - - hypothetical protein JCGZ_06279 [Jatropha curcas]
15 Hb_001168_010 0.1446023506 - - PREDICTED: feruloyl CoA ortho-hydroxylase 1 [Jatropha curcas]
16 Hb_148914_010 0.1454968263 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_025469_040 0.1460066868 - - PREDICTED: acidic mammalian chitinase-like [Jatropha curcas]
18 Hb_000005_350 0.1472055584 - - PREDICTED: uncharacterized protein LOC105634263 [Jatropha curcas]
19 Hb_004079_110 0.1478580868 - - PREDICTED: uncharacterized protein LOC100257802 [Vitis vinifera]
20 Hb_001856_060 0.1488897665 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_020902_020 Hb_020902_020 Hb_001775_050 Hb_001775_050 Hb_020902_020--Hb_001775_050 Hb_001609_080 Hb_001609_080 Hb_020902_020--Hb_001609_080 Hb_008080_040 Hb_008080_040 Hb_020902_020--Hb_008080_040 Hb_005653_100 Hb_005653_100 Hb_020902_020--Hb_005653_100 Hb_000407_110 Hb_000407_110 Hb_020902_020--Hb_000407_110 Hb_001454_300 Hb_001454_300 Hb_020902_020--Hb_001454_300 Hb_129204_050 Hb_129204_050 Hb_001775_050--Hb_129204_050 Hb_001369_320 Hb_001369_320 Hb_001775_050--Hb_001369_320 Hb_000057_160 Hb_000057_160 Hb_001775_050--Hb_000057_160 Hb_001775_050--Hb_005653_100 Hb_001775_050--Hb_001454_300 Hb_001609_080--Hb_005653_100 Hb_001609_080--Hb_000407_110 Hb_006919_010 Hb_006919_010 Hb_001609_080--Hb_006919_010 Hb_000288_140 Hb_000288_140 Hb_001609_080--Hb_000288_140 Hb_111693_010 Hb_111693_010 Hb_001609_080--Hb_111693_010 Hb_000327_300 Hb_000327_300 Hb_008080_040--Hb_000327_300 Hb_004586_080 Hb_004586_080 Hb_008080_040--Hb_004586_080 Hb_008080_040--Hb_000407_110 Hb_002965_020 Hb_002965_020 Hb_008080_040--Hb_002965_020 Hb_001357_260 Hb_001357_260 Hb_008080_040--Hb_001357_260 Hb_005653_100--Hb_000407_110 Hb_005653_100--Hb_111693_010 Hb_004055_080 Hb_004055_080 Hb_005653_100--Hb_004055_080 Hb_005653_100--Hb_006919_010 Hb_000407_110--Hb_006919_010 Hb_007483_030 Hb_007483_030 Hb_000407_110--Hb_007483_030 Hb_000407_110--Hb_004586_080 Hb_001279_220 Hb_001279_220 Hb_001454_300--Hb_001279_220 Hb_001454_300--Hb_001369_320 Hb_175968_010 Hb_175968_010 Hb_001454_300--Hb_175968_010 Hb_004712_080 Hb_004712_080 Hb_001454_300--Hb_004712_080 Hb_001691_060 Hb_001691_060 Hb_001454_300--Hb_001691_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.547487 0.686902 0.135511 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 3.3334 0.169846

CAGE analysis