Hb_020956_020

Information

Type -
Description -
Location Contig20956: 28779-32575
Sequence    

Annotation

kegg
ID rcu:RCOM_0472310
description snf1-kinase beta subunit, plants, putative
nr
ID XP_012078888.1
description PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
swissprot
ID Q9ZUU8
description SNF1-related protein kinase regulatory subunit beta-3 OS=Arabidopsis thaliana GN=KINB3 PE=1 SV=1
trembl
ID B9SCG7
description Snf1-kinase beta subunit, plants, putative OS=Ricinus communis GN=RCOM_0472310 PE=4 SV=1
Gene Ontology
ID GO:0005515
description snf1-related protein kinase regulatory subunit beta-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21672: 28769-32567 , PASA_asmbl_21673: 29310-29656
cDNA
(Sanger)
(ID:Location)		 004_B21.ab1: 28820-32194 , 027_A09.ab1: 28820-32191 , 027_O19.ab1: 28820-32213 , 030_L13.ab1: 28820-32227 , 045_A13.ab1: 28769-32201 , 050_I08.ab1: 28820-32139

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_020956_020 0.0 - - PREDICTED: SNF1-related protein kinase regulatory subunit beta-3-like [Jatropha curcas]
2 Hb_000510_130 0.0372098595 - - PREDICTED: PRA1 family protein F2-like [Jatropha curcas]
3 Hb_010504_020 0.0534327939 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
4 Hb_096563_010 0.0630069539 - - PREDICTED: cytoplasmic tRNA 2-thiolation protein 1 [Prunus mume]
5 Hb_029866_090 0.0658174645 - - PREDICTED: uncharacterized protein LOC105648377 [Jatropha curcas]
6 Hb_001226_160 0.0677466801 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
7 Hb_005305_080 0.0677629827 - - PREDICTED: heterogeneous nuclear ribonucleoprotein H3 isoform X1 [Jatropha curcas]
8 Hb_007590_050 0.0707717007 - - NudC domain-containing protein, putative [Ricinus communis]
9 Hb_000656_400 0.0722584503 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
10 Hb_003092_040 0.0729234971 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 isoform X2 [Pyrus x bretschneideri]
11 Hb_000059_330 0.0734356681 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
12 Hb_002835_080 0.0735168406 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
13 Hb_000398_180 0.0755712147 - - hypothetical protein PRUPE_ppa009665mg [Prunus persica]
14 Hb_000959_260 0.0766736008 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
15 Hb_001301_160 0.0767114862 - - PREDICTED: CRS2-associated factor 2, mitochondrial [Jatropha curcas]
16 Hb_000103_560 0.0780830013 - - ADP-ribosylation factor, putative [Ricinus communis]
17 Hb_000953_020 0.078670076 - - PREDICTED: serine/threonine-protein kinase CTR1 [Jatropha curcas]
18 Hb_000109_160 0.0791596923 - - hypothetical protein PRUPE_ppa012786mg [Prunus persica]
19 Hb_005686_060 0.0794535426 - - PREDICTED: uncharacterized protein LOC101508199 [Cicer arietinum]
20 Hb_003929_250 0.0802338752 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]

Gene co-expression network

sample Hb_020956_020 Hb_020956_020 Hb_000510_130 Hb_000510_130 Hb_020956_020--Hb_000510_130 Hb_010504_020 Hb_010504_020 Hb_020956_020--Hb_010504_020 Hb_096563_010 Hb_096563_010 Hb_020956_020--Hb_096563_010 Hb_029866_090 Hb_029866_090 Hb_020956_020--Hb_029866_090 Hb_001226_160 Hb_001226_160 Hb_020956_020--Hb_001226_160 Hb_005305_080 Hb_005305_080 Hb_020956_020--Hb_005305_080 Hb_000510_130--Hb_010504_020 Hb_000510_130--Hb_005305_080 Hb_003092_040 Hb_003092_040 Hb_000510_130--Hb_003092_040 Hb_004223_280 Hb_004223_280 Hb_000510_130--Hb_004223_280 Hb_000953_020 Hb_000953_020 Hb_000510_130--Hb_000953_020 Hb_010504_020--Hb_005305_080 Hb_002477_330 Hb_002477_330 Hb_010504_020--Hb_002477_330 Hb_159809_020 Hb_159809_020 Hb_010504_020--Hb_159809_020 Hb_000959_260 Hb_000959_260 Hb_010504_020--Hb_000959_260 Hb_000661_250 Hb_000661_250 Hb_096563_010--Hb_000661_250 Hb_003010_030 Hb_003010_030 Hb_096563_010--Hb_003010_030 Hb_001301_160 Hb_001301_160 Hb_096563_010--Hb_001301_160 Hb_001259_090 Hb_001259_090 Hb_096563_010--Hb_001259_090 Hb_000059_330 Hb_000059_330 Hb_096563_010--Hb_000059_330 Hb_000210_180 Hb_000210_180 Hb_096563_010--Hb_000210_180 Hb_000876_070 Hb_000876_070 Hb_029866_090--Hb_000876_070 Hb_001552_020 Hb_001552_020 Hb_029866_090--Hb_001552_020 Hb_003057_100 Hb_003057_100 Hb_029866_090--Hb_003057_100 Hb_002739_100 Hb_002739_100 Hb_029866_090--Hb_002739_100 Hb_005539_350 Hb_005539_350 Hb_029866_090--Hb_005539_350 Hb_000656_400 Hb_000656_400 Hb_001226_160--Hb_000656_400 Hb_000056_200 Hb_000056_200 Hb_001226_160--Hb_000056_200 Hb_002660_080 Hb_002660_080 Hb_001226_160--Hb_002660_080 Hb_001226_160--Hb_096563_010 Hb_002226_070 Hb_002226_070 Hb_001226_160--Hb_002226_070 Hb_003615_010 Hb_003615_010 Hb_001226_160--Hb_003615_010 Hb_005618_170 Hb_005618_170 Hb_005305_080--Hb_005618_170 Hb_004254_120 Hb_004254_120 Hb_005305_080--Hb_004254_120 Hb_032202_190 Hb_032202_190 Hb_005305_080--Hb_032202_190 Hb_005305_080--Hb_000876_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
38.996 29.7716 16.7587 27.201 31.0544 49.6661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
48.4754 58.2606 38.1204 18.9393 16.0124

CAGE analysis