Hb_021068_010

Information

Type -
Description -
Location Contig21068: 13221-15401
Sequence    

Annotation

kegg
ID rcu:RCOM_0482400
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_012068067.1
description PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
swissprot
ID Q6EP49
description MADS-box transcription factor 27 OS=Oryza sativa subsp. japonica GN=MADS27 PE=2 SV=2
trembl
ID B9SMY1
description Mads box protein, putative OS=Ricinus communis GN=RCOM_0482400 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box transcription factor 23-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021068_010 0.0 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
2 Hb_001019_120 0.2283772798 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
3 Hb_032920_100 0.2375956249 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
4 Hb_183574_010 0.2414854229 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
5 Hb_009973_020 0.2562984714 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
6 Hb_004361_020 0.260169446 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
7 Hb_001709_130 0.2725138755 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
8 Hb_000330_080 0.2727208312 - - auxilin, putative [Ricinus communis]
9 Hb_005356_060 0.2837869195 - - hypothetical protein POPTR_0013s14620g, partial [Populus trichocarpa]
10 Hb_001965_020 0.2854786459 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
11 Hb_001160_010 0.2957166986 - - -
12 Hb_036702_010 0.2993483992 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_005081_040 0.3002843542 - - -
14 Hb_004449_240 0.3036425099 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
15 Hb_007933_020 0.3038170864 - - PREDICTED: uncharacterized protein At4g37920, chloroplastic [Jatropha curcas]
16 Hb_005451_020 0.3046769905 - - PREDICTED: uncharacterized protein LOC104105697 [Nicotiana tomentosiformis]
17 Hb_002518_110 0.3053863947 - - 1-amino-cyclopropane-1-carboxylic acid oxidase [Manihot esculenta]
18 Hb_067776_020 0.3062477279 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]
19 Hb_049483_010 0.3066832049 - - leucyl-tRNA synthetase, putative [Ricinus communis]
20 Hb_002159_030 0.3129173951 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]

Gene co-expression network

sample Hb_021068_010 Hb_021068_010 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_183574_010 Hb_183574_010 Hb_021068_010--Hb_183574_010 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_004361_020 Hb_004361_020 Hb_021068_010--Hb_004361_020 Hb_001709_130 Hb_001709_130 Hb_021068_010--Hb_001709_130 Hb_036702_010 Hb_036702_010 Hb_001019_120--Hb_036702_010 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_002159_030 Hb_002159_030 Hb_001019_120--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_001019_120--Hb_004324_240 Hb_007933_020 Hb_007933_020 Hb_001019_120--Hb_007933_020 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070 Hb_000330_080 Hb_000330_080 Hb_032920_100--Hb_000330_080 Hb_000284_100 Hb_000284_100 Hb_032920_100--Hb_000284_100 Hb_001009_100 Hb_001009_100 Hb_032920_100--Hb_001009_100 Hb_032920_100--Hb_001709_130 Hb_004884_020 Hb_004884_020 Hb_032920_100--Hb_004884_020 Hb_008123_010 Hb_008123_010 Hb_032920_100--Hb_008123_010 Hb_183574_010--Hb_001709_130 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_005241_020 Hb_005241_020 Hb_183574_010--Hb_005241_020 Hb_009973_020--Hb_047661_010 Hb_009973_020--Hb_005989_010 Hb_023323_010 Hb_023323_010 Hb_009973_020--Hb_023323_010 Hb_159555_010 Hb_159555_010 Hb_009973_020--Hb_159555_010 Hb_001678_020 Hb_001678_020 Hb_009973_020--Hb_001678_020 Hb_004361_020--Hb_001709_130 Hb_004361_020--Hb_001019_120 Hb_004361_020--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_004361_020--Hb_000236_090 Hb_000078_170 Hb_000078_170 Hb_001709_130--Hb_000078_170 Hb_001709_130--Hb_000330_080 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_001709_130--Hb_004884_020 Hb_001709_130--Hb_001009_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248485 0 0.0201426 0.0705002 0.437875 0.683511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0881073 0.0586515 0.489137

CAGE analysis