Hb_021068_020

Information

Type -
Description -
Location Contig21068: 13887-14727
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21788: 7091-13455 , PASA_asmbl_21789: 13461-14679 , PASA_asmbl_21790: 13559-14608
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021068_020 0.0 - - -
2 Hb_136856_010 0.0179906313 - - PREDICTED: uncharacterized protein LOC105436302 [Cucumis sativus]
3 Hb_009066_010 0.0208635692 - - -
4 Hb_068347_020 0.0259609532 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_027394_010 0.0259822533 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_089491_010 0.0575047592 - - -
7 Hb_009268_110 0.0594120365 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]
8 Hb_013205_010 0.1030206191 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
9 Hb_013727_010 0.107911606 - - hypothetical protein JCGZ_08656 [Jatropha curcas]
10 Hb_010399_020 0.1352473777 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_008151_030 0.1391255677 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_034667_010 0.1455810637 - - -
13 Hb_000260_190 0.1497086481 - - -
14 Hb_002400_450 0.1521314264 - - PREDICTED: protein MEMO1 isoform X2 [Sesamum indicum]
15 Hb_005542_020 0.1529685446 - - lupus la ribonucleoprotein, putative [Ricinus communis]
16 Hb_003400_030 0.1568187447 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
17 Hb_000944_010 0.1569161768 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
18 Hb_076583_010 0.1636041569 - - hypothetical protein JCGZ_17827 [Jatropha curcas]
19 Hb_008473_010 0.1674966464 - - PREDICTED: laccase-14-like [Jatropha curcas]
20 Hb_091369_010 0.168470156 - - -

Gene co-expression network

sample Hb_021068_020 Hb_021068_020 Hb_136856_010 Hb_136856_010 Hb_021068_020--Hb_136856_010 Hb_009066_010 Hb_009066_010 Hb_021068_020--Hb_009066_010 Hb_068347_020 Hb_068347_020 Hb_021068_020--Hb_068347_020 Hb_027394_010 Hb_027394_010 Hb_021068_020--Hb_027394_010 Hb_089491_010 Hb_089491_010 Hb_021068_020--Hb_089491_010 Hb_009268_110 Hb_009268_110 Hb_021068_020--Hb_009268_110 Hb_136856_010--Hb_009066_010 Hb_136856_010--Hb_089491_010 Hb_136856_010--Hb_009268_110 Hb_136856_010--Hb_068347_020 Hb_136856_010--Hb_027394_010 Hb_009066_010--Hb_068347_020 Hb_009066_010--Hb_027394_010 Hb_009066_010--Hb_089491_010 Hb_009066_010--Hb_009268_110 Hb_068347_020--Hb_027394_010 Hb_013205_010 Hb_013205_010 Hb_068347_020--Hb_013205_010 Hb_068347_020--Hb_089491_010 Hb_027394_010--Hb_013205_010 Hb_027394_010--Hb_089491_010 Hb_089491_010--Hb_009268_110 Hb_013727_010 Hb_013727_010 Hb_089491_010--Hb_013727_010 Hb_009268_110--Hb_013727_010 Hb_009268_110--Hb_068347_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.144566 0.288219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis