Hb_021068_030

Information

Type transcription factor
Description TF Family: M-type
Location Contig21068: 35783-35974
Sequence    

Annotation

kegg
ID pop:POPTR_0001s29100g
description hypothetical protein
nr
ID KJB64092.1
description hypothetical protein B456_010G032700 [Gossypium raimondii]
swissprot
ID Q9SI38
description MADS-box transcription factor ANR1 OS=Arabidopsis thaliana GN=ANR1 PE=1 SV=1
trembl
ID A0A0D2R1C7
description Gossypium raimondii chromosome 10, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_010G032700 PE=4 SV=1
Gene Ontology
ID GO:0003677
description agamous-like 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021068_030 0.0 transcription factor TF Family: M-type hypothetical protein B456_010G032700 [Gossypium raimondii]
2 Hb_002023_040 0.201774971 - - -
3 Hb_001278_080 0.2106339739 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
4 Hb_020532_010 0.2288989842 - - PREDICTED: uncharacterized protein LOC105775165 [Gossypium raimondii]
5 Hb_002942_180 0.2298630686 - - phosphate transporter [Manihot esculenta]
6 Hb_030885_020 0.2623776364 - - -
7 Hb_011639_090 0.2898813671 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]
8 Hb_001810_020 0.2944885446 - - -
9 Hb_000740_120 0.3110854325 - - -
10 Hb_154381_010 0.3132143353 - - -
11 Hb_002368_090 0.3134956493 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
12 Hb_000053_050 0.3159149351 - - hypothetical protein F775_01878 [Aegilops tauschii]
13 Hb_004770_060 0.3198958726 - - unnamed protein product, partial [Coffea canephora]
14 Hb_131652_010 0.3200307788 - - hypothetical protein CICLE_v10010066mg [Citrus clementina]
15 Hb_003551_040 0.3203176788 - - PREDICTED: uncharacterized protein LOC103331076 [Prunus mume]
16 Hb_103093_010 0.320392519 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
17 Hb_094132_010 0.3227956877 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
18 Hb_052402_010 0.3264309068 - - -
19 Hb_032258_020 0.3287124717 - - PREDICTED: amidase 1-like isoform X2 [Malus domestica]
20 Hb_011206_020 0.3297729661 - - -

Gene co-expression network

sample Hb_021068_030 Hb_021068_030 Hb_002023_040 Hb_002023_040 Hb_021068_030--Hb_002023_040 Hb_001278_080 Hb_001278_080 Hb_021068_030--Hb_001278_080 Hb_020532_010 Hb_020532_010 Hb_021068_030--Hb_020532_010 Hb_002942_180 Hb_002942_180 Hb_021068_030--Hb_002942_180 Hb_030885_020 Hb_030885_020 Hb_021068_030--Hb_030885_020 Hb_011639_090 Hb_011639_090 Hb_021068_030--Hb_011639_090 Hb_002023_040--Hb_001278_080 Hb_001810_020 Hb_001810_020 Hb_002023_040--Hb_001810_020 Hb_000066_180 Hb_000066_180 Hb_002023_040--Hb_000066_180 Hb_000053_050 Hb_000053_050 Hb_002023_040--Hb_000053_050 Hb_000193_030 Hb_000193_030 Hb_002023_040--Hb_000193_030 Hb_017895_010 Hb_017895_010 Hb_001278_080--Hb_017895_010 Hb_001278_080--Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_001278_080--Hb_002368_090 Hb_002204_040 Hb_002204_040 Hb_001278_080--Hb_002204_040 Hb_020532_010--Hb_002942_180 Hb_094132_010 Hb_094132_010 Hb_020532_010--Hb_094132_010 Hb_103093_010 Hb_103093_010 Hb_020532_010--Hb_103093_010 Hb_020532_010--Hb_000193_030 Hb_004770_060 Hb_004770_060 Hb_020532_010--Hb_004770_060 Hb_008226_110 Hb_008226_110 Hb_002942_180--Hb_008226_110 Hb_131652_010 Hb_131652_010 Hb_002942_180--Hb_131652_010 Hb_006971_080 Hb_006971_080 Hb_002942_180--Hb_006971_080 Hb_005392_100 Hb_005392_100 Hb_002942_180--Hb_005392_100 Hb_002267_120 Hb_002267_120 Hb_002942_180--Hb_002267_120 Hb_154381_010 Hb_154381_010 Hb_030885_020--Hb_154381_010 Hb_003551_040 Hb_003551_040 Hb_030885_020--Hb_003551_040 Hb_030885_020--Hb_004770_060 Hb_005597_010 Hb_005597_010 Hb_030885_020--Hb_005597_010 Hb_060585_010 Hb_060585_010 Hb_030885_020--Hb_060585_010 Hb_030885_020--Hb_020532_010 Hb_007188_050 Hb_007188_050 Hb_011639_090--Hb_007188_050 Hb_003623_020 Hb_003623_020 Hb_011639_090--Hb_003623_020 Hb_071079_050 Hb_071079_050 Hb_011639_090--Hb_071079_050 Hb_001385_080 Hb_001385_080 Hb_011639_090--Hb_001385_080 Hb_001691_160 Hb_001691_160 Hb_011639_090--Hb_001691_160 Hb_079978_010 Hb_079978_010 Hb_011639_090--Hb_079978_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 1.74371 5.22792 0 15.0277
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 5.28542 0

CAGE analysis