Hb_021068_040

Information

Type -
Description -
Location Contig21068: 46184-50305
Sequence    

Annotation

kegg
ID rcu:RCOM_0482610
description nucleic acid binding protein, putative
nr
ID XP_012068066.1
description PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
swissprot
ID Q6GPH4
description XIAP-associated factor 1 OS=Homo sapiens GN=XAF1 PE=1 SV=1
trembl
ID A0A067LBM5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15921 PE=4 SV=1
Gene Ontology
ID GO:0005622
description xiap-associated factor 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21791: 46294-50121 , PASA_asmbl_21792: 46865-47012
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021068_040 0.0 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
2 Hb_000805_240 0.069510503 - - PREDICTED: uncharacterized protein C20orf24 homolog [Jatropha curcas]
3 Hb_005846_040 0.0730645976 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
4 Hb_006615_240 0.0738761853 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
5 Hb_000205_090 0.0750007471 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
6 Hb_003582_060 0.0752769027 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
7 Hb_003151_040 0.0788869592 transcription factor TF Family: Alfin-like zinc finger family protein [Populus trichocarpa]
8 Hb_000030_030 0.0791093329 - - PREDICTED: ADP-glucose phosphorylase [Jatropha curcas]
9 Hb_006059_050 0.080220357 - - PREDICTED: polyadenylate-binding protein 1 [Jatropha curcas]
10 Hb_004109_170 0.0812140425 - - PREDICTED: probable ribokinase [Jatropha curcas]
11 Hb_000703_350 0.0813498156 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
12 Hb_008013_050 0.081966069 transcription factor TF Family: PHD PREDICTED: PHD finger protein At1g33420 [Jatropha curcas]
13 Hb_002301_150 0.0829681797 - - Drought-responsive family protein [Theobroma cacao]
14 Hb_003502_060 0.0829722804 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]
15 Hb_000193_110 0.0831665934 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
16 Hb_001300_150 0.0842320048 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
17 Hb_003787_010 0.084613881 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
18 Hb_001247_100 0.0850031534 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
19 Hb_002995_020 0.0861364607 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
20 Hb_001245_100 0.0862922393 transcription factor TF Family: Alfin-like ATP synthase alpha subunit mitochondrial, putative [Ricinus communis]

Gene co-expression network

sample Hb_021068_040 Hb_021068_040 Hb_000805_240 Hb_000805_240 Hb_021068_040--Hb_000805_240 Hb_005846_040 Hb_005846_040 Hb_021068_040--Hb_005846_040 Hb_006615_240 Hb_006615_240 Hb_021068_040--Hb_006615_240 Hb_000205_090 Hb_000205_090 Hb_021068_040--Hb_000205_090 Hb_003582_060 Hb_003582_060 Hb_021068_040--Hb_003582_060 Hb_003151_040 Hb_003151_040 Hb_021068_040--Hb_003151_040 Hb_000805_240--Hb_006615_240 Hb_009615_070 Hb_009615_070 Hb_000805_240--Hb_009615_070 Hb_008071_020 Hb_008071_020 Hb_000805_240--Hb_008071_020 Hb_004696_080 Hb_004696_080 Hb_000805_240--Hb_004696_080 Hb_152784_010 Hb_152784_010 Hb_000805_240--Hb_152784_010 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_003787_010 Hb_003787_010 Hb_005846_040--Hb_003787_010 Hb_004116_190 Hb_004116_190 Hb_005846_040--Hb_004116_190 Hb_006615_240--Hb_003582_060 Hb_010098_050 Hb_010098_050 Hb_006615_240--Hb_010098_050 Hb_000390_300 Hb_000390_300 Hb_006615_240--Hb_000390_300 Hb_004109_170 Hb_004109_170 Hb_006615_240--Hb_004109_170 Hb_000003_230 Hb_000003_230 Hb_006615_240--Hb_000003_230 Hb_001341_150 Hb_001341_150 Hb_006615_240--Hb_001341_150 Hb_000205_090--Hb_004109_170 Hb_000205_090--Hb_010098_050 Hb_118419_010 Hb_118419_010 Hb_000205_090--Hb_118419_010 Hb_000236_040 Hb_000236_040 Hb_000205_090--Hb_000236_040 Hb_000656_240 Hb_000656_240 Hb_000205_090--Hb_000656_240 Hb_000205_090--Hb_004116_190 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_017895_040 Hb_017895_040 Hb_003582_060--Hb_017895_040 Hb_001300_150 Hb_001300_150 Hb_003582_060--Hb_001300_150 Hb_001766_060 Hb_001766_060 Hb_003151_040--Hb_001766_060 Hb_003151_040--Hb_000373_070 Hb_006059_050 Hb_006059_050 Hb_003151_040--Hb_006059_050 Hb_000152_500 Hb_000152_500 Hb_003151_040--Hb_000152_500 Hb_000001_060 Hb_000001_060 Hb_003151_040--Hb_000001_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
24.2122 16.4594 24.5935 27.6567 14.0242 15.6276
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
32.4508 40.5841 29.1968 17.5448 11.5681

CAGE analysis