Hb_021068_050

Information

Type -
Description -
Location Contig21068: 52582-61798
Sequence    

Annotation

kegg
ID pop:POPTR_0005s19450g
description POPTRDRAFT_716387; hypothetical protein
nr
ID XP_012068065.1
description PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
swissprot
ID Q8RJP2
description Rhamnogalacturonate lyase OS=Dickeya dadantii (strain 3937) GN=rhiE PE=1 SV=1
trembl
ID A0A067L2P1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15920 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable rhamnogalacturonate lyase b isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21793: 53934-61776 , PASA_asmbl_21794: 52436-61776
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021068_050 0.0 - - PREDICTED: probable rhamnogalacturonate lyase B [Jatropha curcas]
2 Hb_000376_050 0.0630238427 - - polyadenylate-binding protein, putative [Ricinus communis]
3 Hb_002603_100 0.0777489755 - - ATATH9, putative [Ricinus communis]
4 Hb_024835_030 0.0802072099 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
5 Hb_022250_040 0.0828322491 - - PREDICTED: succinate dehydrogenase assembly factor 2, mitochondrial [Jatropha curcas]
6 Hb_004012_010 0.0831484468 - - PREDICTED: 40S ribosomal protein S15a-1-like [Gossypium raimondii]
7 Hb_026198_050 0.08431693 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
8 Hb_000056_340 0.0845719157 - - 60S ribosomal protein L34A [Hevea brasiliensis]
9 Hb_004662_030 0.0850022191 - - hypothetical protein PRUPE_ppa012487mg [Prunus persica]
10 Hb_006775_080 0.0851355275 - - PREDICTED: uncharacterized protein LOC105649730 [Jatropha curcas]
11 Hb_009711_030 0.085175409 - - PREDICTED: uncharacterized protein LOC105647792 isoform X1 [Jatropha curcas]
12 Hb_000975_290 0.0853757161 - - PREDICTED: 40S ribosomal protein S15a-1 [Jatropha curcas]
13 Hb_001439_120 0.0857634643 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000956_010 0.0858063674 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
15 Hb_000313_380 0.0867886496 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001243_050 0.0870606771 - - PREDICTED: uncharacterized protein LOC105643776 [Jatropha curcas]
17 Hb_023386_080 0.0872872381 - - PREDICTED: peroxisome biogenesis protein 19-2-like [Jatropha curcas]
18 Hb_000116_470 0.087368033 - - PREDICTED: AT-hook motif nuclear-localized protein 10-like [Jatropha curcas]
19 Hb_000091_090 0.0876688442 - - hypothetical protein JCGZ_09031 [Jatropha curcas]
20 Hb_000329_040 0.0884617361 - - PREDICTED: UDP-glucuronate 4-epimerase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_021068_050 Hb_021068_050 Hb_000376_050 Hb_000376_050 Hb_021068_050--Hb_000376_050 Hb_002603_100 Hb_002603_100 Hb_021068_050--Hb_002603_100 Hb_024835_030 Hb_024835_030 Hb_021068_050--Hb_024835_030 Hb_022250_040 Hb_022250_040 Hb_021068_050--Hb_022250_040 Hb_004012_010 Hb_004012_010 Hb_021068_050--Hb_004012_010 Hb_026198_050 Hb_026198_050 Hb_021068_050--Hb_026198_050 Hb_000956_010 Hb_000956_010 Hb_000376_050--Hb_000956_010 Hb_000376_050--Hb_002603_100 Hb_004662_030 Hb_004662_030 Hb_000376_050--Hb_004662_030 Hb_001427_120 Hb_001427_120 Hb_000376_050--Hb_001427_120 Hb_001243_050 Hb_001243_050 Hb_000376_050--Hb_001243_050 Hb_023386_080 Hb_023386_080 Hb_002603_100--Hb_023386_080 Hb_002603_100--Hb_022250_040 Hb_002603_100--Hb_000956_010 Hb_002603_100--Hb_001243_050 Hb_001671_020 Hb_001671_020 Hb_002603_100--Hb_001671_020 Hb_024835_030--Hb_004012_010 Hb_002762_060 Hb_002762_060 Hb_024835_030--Hb_002762_060 Hb_009711_030 Hb_009711_030 Hb_024835_030--Hb_009711_030 Hb_004920_040 Hb_004920_040 Hb_024835_030--Hb_004920_040 Hb_024835_030--Hb_022250_040 Hb_000056_340 Hb_000056_340 Hb_024835_030--Hb_000056_340 Hb_022250_040--Hb_009711_030 Hb_000371_080 Hb_000371_080 Hb_022250_040--Hb_000371_080 Hb_002078_450 Hb_002078_450 Hb_022250_040--Hb_002078_450 Hb_022250_040--Hb_004662_030 Hb_125000_010 Hb_125000_010 Hb_022250_040--Hb_125000_010 Hb_004012_010--Hb_026198_050 Hb_006775_080 Hb_006775_080 Hb_004012_010--Hb_006775_080 Hb_004012_010--Hb_004920_040 Hb_003185_020 Hb_003185_020 Hb_004012_010--Hb_003185_020 Hb_004012_010--Hb_002762_060 Hb_000392_270 Hb_000392_270 Hb_026198_050--Hb_000392_270 Hb_026198_050--Hb_002762_060 Hb_003551_020 Hb_003551_020 Hb_026198_050--Hb_003551_020 Hb_001138_050 Hb_001138_050 Hb_026198_050--Hb_001138_050 Hb_004722_060 Hb_004722_060 Hb_026198_050--Hb_004722_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.8791 26.8937 8.05013 20.1556 74.7301 60.2663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
82.9995 83.9878 74.5142 20.7492 8.63619

CAGE analysis