Hb_021079_010

Information

Type -
Description -
Location Contig21079: 14756-15178
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03060g
description hypothetical protein
nr
ID XP_011031602.1
description PREDICTED: histone H2B-like [Populus euphratica]
swissprot
ID Q9SI96
description Histone H2B.3 OS=Arabidopsis thaliana GN=At2g28720 PE=1 SV=3
trembl
ID U5G795
description Histone H2B OS=Populus trichocarpa GN=POPTR_0008s03060g PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21826: 14683-15338
cDNA
(Sanger)
(ID:Location)		 011_E21.ab1: 14682-15337 , 014_M23.ab1: 14683-15337 , 021_J05.ab1: 14686-15294 , 035_H16.ab1: 14683-15337 , 043_J22.ab1: 14686-15337

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021079_010 0.0 - - PREDICTED: histone H2B-like [Populus euphratica]
2 Hb_000392_550 0.1056927256 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_027298_030 0.1149244551 - - PREDICTED: histone H1-like [Jatropha curcas]
4 Hb_002876_020 0.1216187428 - - PREDICTED: maf-like protein DDB_G0281937 isoform X2 [Jatropha curcas]
5 Hb_003106_100 0.1292393032 - - mannose-1-phosphate guanyltransferase, putative [Ricinus communis]
6 Hb_003181_060 0.1296195142 - - PREDICTED: triosephosphate isomerase, cytosolic [Jatropha curcas]
7 Hb_000210_060 0.133082071 transcription factor TF Family: E2F-DP hypothetical protein JCGZ_08780 [Jatropha curcas]
8 Hb_004317_030 0.1334348076 - - PREDICTED: protein CHROMOSOME TRANSMISSION FIDELITY 7 [Jatropha curcas]
9 Hb_000032_370 0.1358683218 - - PREDICTED: nucleoside diphosphate kinase III, chloroplastic/mitochondrial-like [Citrus sinensis]
10 Hb_001408_060 0.136146643 - - PREDICTED: 60S ribosomal protein L3 [Eucalyptus grandis]
11 Hb_002477_010 0.136211586 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000438_140 0.1371169543 - - hypothetical protein CISIN_1g018088mg [Citrus sinensis]
13 Hb_001369_790 0.1424282012 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
14 Hb_000510_030 0.1455577761 - - Winged-helix DNA-binding transcription factor family protein [Theobroma cacao]
15 Hb_009680_020 0.1456672114 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
16 Hb_007894_050 0.1458144554 - - PREDICTED: reactive Intermediate Deaminase A, chloroplastic [Jatropha curcas]
17 Hb_000035_480 0.1470310982 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
18 Hb_000187_040 0.1478224268 - - PREDICTED: pyridoxal kinase isoform X5 [Vitis vinifera]
19 Hb_007827_010 0.1494155028 - - PREDICTED: uncharacterized protein C12B10.15c [Jatropha curcas]
20 Hb_015057_020 0.151191178 - - PREDICTED: E3 SUMO-protein ligase MMS21 [Jatropha curcas]

Gene co-expression network

sample Hb_021079_010 Hb_021079_010 Hb_000392_550 Hb_000392_550 Hb_021079_010--Hb_000392_550 Hb_027298_030 Hb_027298_030 Hb_021079_010--Hb_027298_030 Hb_002876_020 Hb_002876_020 Hb_021079_010--Hb_002876_020 Hb_003106_100 Hb_003106_100 Hb_021079_010--Hb_003106_100 Hb_003181_060 Hb_003181_060 Hb_021079_010--Hb_003181_060 Hb_000210_060 Hb_000210_060 Hb_021079_010--Hb_000210_060 Hb_000510_030 Hb_000510_030 Hb_000392_550--Hb_000510_030 Hb_001369_790 Hb_001369_790 Hb_000392_550--Hb_001369_790 Hb_000032_370 Hb_000032_370 Hb_000392_550--Hb_000032_370 Hb_004317_030 Hb_004317_030 Hb_000392_550--Hb_004317_030 Hb_000035_480 Hb_000035_480 Hb_000392_550--Hb_000035_480 Hb_027298_010 Hb_027298_010 Hb_000392_550--Hb_027298_010 Hb_027298_030--Hb_003181_060 Hb_027298_030--Hb_004317_030 Hb_000510_080 Hb_000510_080 Hb_027298_030--Hb_000510_080 Hb_006836_030 Hb_006836_030 Hb_027298_030--Hb_006836_030 Hb_000723_340 Hb_000723_340 Hb_027298_030--Hb_000723_340 Hb_002876_020--Hb_003106_100 Hb_000649_140 Hb_000649_140 Hb_002876_020--Hb_000649_140 Hb_001019_150 Hb_001019_150 Hb_002876_020--Hb_001019_150 Hb_000428_060 Hb_000428_060 Hb_002876_020--Hb_000428_060 Hb_001353_010 Hb_001353_010 Hb_002876_020--Hb_001353_010 Hb_001242_080 Hb_001242_080 Hb_002876_020--Hb_001242_080 Hb_003106_100--Hb_000649_140 Hb_003106_100--Hb_001019_150 Hb_003106_100--Hb_000428_060 Hb_003106_100--Hb_001353_010 Hb_000465_070 Hb_000465_070 Hb_003106_100--Hb_000465_070 Hb_001269_470 Hb_001269_470 Hb_003181_060--Hb_001269_470 Hb_003181_060--Hb_027298_010 Hb_001711_120 Hb_001711_120 Hb_003181_060--Hb_001711_120 Hb_003181_060--Hb_000392_550 Hb_015057_020 Hb_015057_020 Hb_000210_060--Hb_015057_020 Hb_168893_020 Hb_168893_020 Hb_000210_060--Hb_168893_020 Hb_002477_290 Hb_002477_290 Hb_000210_060--Hb_002477_290 Hb_001898_050 Hb_001898_050 Hb_000210_060--Hb_001898_050 Hb_001510_020 Hb_001510_020 Hb_000210_060--Hb_001510_020 Hb_005276_040 Hb_005276_040 Hb_000210_060--Hb_005276_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.9879 31.8335 143.271 170.419 16.5577 44.8766
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.737 269.006 42.1898 120.832 190.886

CAGE analysis