Hb_021079_020

Information

Type -
Description -
Location Contig21079: 16882-23227
Sequence    

Annotation

kegg
ID pop:POPTR_0008s03010g
description hypothetical protein
nr
ID XP_012090407.1
description PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
swissprot
ID P29503
description Protein neuralized OS=Drosophila melanogaster GN=neur PE=1 SV=2
trembl
ID A0A067L9G7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01567 PE=4 SV=1
Gene Ontology
ID GO:0005515
description protein neuralized

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21827: 16921-17143 , PASA_asmbl_21828: 22842-23747
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021079_020 0.0 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
2 Hb_000376_210 0.0850382439 - - PREDICTED: O-acyltransferase WSD1-like [Jatropha curcas]
3 Hb_001221_300 0.0936662167 - - PREDICTED: acetolactate synthase 3, chloroplastic [Jatropha curcas]
4 Hb_013399_090 0.1061444356 - - PREDICTED: phospholipid:diacylglycerol acyltransferase 1-like [Jatropha curcas]
5 Hb_000340_360 0.1066793273 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
6 Hb_015778_060 0.1093888764 - - PREDICTED: uncharacterized protein LOC105650696 [Jatropha curcas]
7 Hb_000170_160 0.1094648403 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
8 Hb_000665_200 0.1095798536 - - calcineurin-like phosphoesterase [Manihot esculenta]
9 Hb_000008_280 0.1115676689 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
10 Hb_000025_500 0.1135847753 - - Ran GTPase binding protein, putative [Ricinus communis]
11 Hb_004162_190 0.1149045157 - - PREDICTED: uncharacterized protein LOC105627993 [Jatropha curcas]
12 Hb_002249_030 0.11507308 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
13 Hb_000186_080 0.1155044424 - - PREDICTED: protein unc-45 homolog B-like [Gossypium raimondii]
14 Hb_004994_350 0.1165373623 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
15 Hb_014006_010 0.1175255732 - - PREDICTED: uncharacterized protein LOC105647962 [Jatropha curcas]
16 Hb_000844_050 0.1185890006 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
17 Hb_001178_030 0.1194216173 - - PREDICTED: 1,4-alpha-glucan-branching enzyme 2-2, chloroplastic/amyloplastic [Jatropha curcas]
18 Hb_000762_110 0.1200647184 - - PREDICTED: protease Do-like 1, chloroplastic [Jatropha curcas]
19 Hb_013405_180 0.1218009527 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
20 Hb_000404_030 0.1230586665 - - PREDICTED: protein NAP1 [Jatropha curcas]

Gene co-expression network

sample Hb_021079_020 Hb_021079_020 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_013399_090 Hb_013399_090 Hb_021079_020--Hb_013399_090 Hb_000340_360 Hb_000340_360 Hb_021079_020--Hb_000340_360 Hb_015778_060 Hb_015778_060 Hb_021079_020--Hb_015778_060 Hb_000170_160 Hb_000170_160 Hb_021079_020--Hb_000170_160 Hb_006916_050 Hb_006916_050 Hb_000376_210--Hb_006916_050 Hb_000617_250 Hb_000617_250 Hb_000376_210--Hb_000617_250 Hb_004629_030 Hb_004629_030 Hb_000376_210--Hb_004629_030 Hb_000762_110 Hb_000762_110 Hb_000376_210--Hb_000762_110 Hb_068804_090 Hb_068804_090 Hb_000376_210--Hb_068804_090 Hb_000369_080 Hb_000369_080 Hb_001221_300--Hb_000369_080 Hb_000025_500 Hb_000025_500 Hb_001221_300--Hb_000025_500 Hb_004041_030 Hb_004041_030 Hb_001221_300--Hb_004041_030 Hb_001439_070 Hb_001439_070 Hb_001221_300--Hb_001439_070 Hb_001221_300--Hb_000376_210 Hb_014006_010 Hb_014006_010 Hb_013399_090--Hb_014006_010 Hb_013399_090--Hb_000340_360 Hb_013399_090--Hb_000025_500 Hb_000320_360 Hb_000320_360 Hb_013399_090--Hb_000320_360 Hb_001408_120 Hb_001408_120 Hb_013399_090--Hb_001408_120 Hb_004586_090 Hb_004586_090 Hb_013399_090--Hb_004586_090 Hb_000340_360--Hb_014006_010 Hb_000340_360--Hb_000369_080 Hb_001951_100 Hb_001951_100 Hb_000340_360--Hb_001951_100 Hb_013405_180 Hb_013405_180 Hb_000340_360--Hb_013405_180 Hb_005183_140 Hb_005183_140 Hb_000340_360--Hb_005183_140 Hb_002973_110 Hb_002973_110 Hb_015778_060--Hb_002973_110 Hb_000186_080 Hb_000186_080 Hb_015778_060--Hb_000186_080 Hb_002986_070 Hb_002986_070 Hb_015778_060--Hb_002986_070 Hb_015778_060--Hb_013399_090 Hb_015778_060--Hb_000320_360 Hb_000170_160--Hb_013405_180 Hb_003750_130 Hb_003750_130 Hb_000170_160--Hb_003750_130 Hb_000008_280 Hb_000008_280 Hb_000170_160--Hb_000008_280 Hb_001998_210 Hb_001998_210 Hb_000170_160--Hb_001998_210 Hb_000673_010 Hb_000673_010 Hb_000170_160--Hb_000673_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.08849 15.0291 10.1012 9.02451 4.16858 2.93311
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.26614 3.544 4.05972 4.91497 22.2071

CAGE analysis