Hb_021142_030

Information

Type -
Description -
Location Contig21142: 10710-13205
Sequence    

Annotation

kegg
ID cit:102624582
description TMV resistance protein N-like
nr
ID KDP38817.1
description hypothetical protein JCGZ_04974 [Jatropha curcas]
swissprot
ID Q40392
description TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1
trembl
ID A0A067KRS6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04974 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021142_030 0.0 - - hypothetical protein JCGZ_04974 [Jatropha curcas]
2 Hb_009385_010 0.0254879221 - - Cysteine/Histidine-rich C1 domain family protein, putative [Theobroma cacao]
3 Hb_007747_070 0.0318052732 - - PREDICTED: casparian strip membrane protein 1-like [Jatropha curcas]
4 Hb_001410_040 0.0334231119 - - Protein ABIL2, putative [Ricinus communis]
5 Hb_007894_040 0.0478637309 - - PREDICTED: NEP1-interacting protein 1 isoform X1 [Jatropha curcas]
6 Hb_004788_030 0.0554915491 - - PREDICTED: E3 ubiquitin-protein ligase HERC2-like isoform X1 [Jatropha curcas]
7 Hb_008821_030 0.0595133775 - - PREDICTED: glutamic acid-rich protein-like [Jatropha curcas]
8 Hb_006083_010 0.0597853339 transcription factor TF Family: B3 DNA binding protein, putative [Ricinus communis]
9 Hb_012146_010 0.0621973679 - - PREDICTED: uncharacterized protein LOC105111251 [Populus euphratica]
10 Hb_055877_010 0.0748213715 - - hypothetical protein JCGZ_26658 [Jatropha curcas]
11 Hb_100395_010 0.0858404005 - - ankyrin repeat-containing protein, putative [Ricinus communis]
12 Hb_003847_090 0.0898817909 - - PREDICTED: tyrosine decarboxylase 1-like [Jatropha curcas]
13 Hb_012400_020 0.0957377943 - - Spotted leaf protein, putative [Ricinus communis]
14 Hb_019429_020 0.1022928718 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
15 Hb_046610_010 0.1032310337 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_071654_010 0.1061617174 - - non-ltr retroelement reverse transcriptase [Rosa rugosa]
17 Hb_001117_020 0.1085856177 - - hypothetical protein CICLE_v10008579mg [Citrus clementina]
18 Hb_000371_030 0.109602039 - - PREDICTED: LOW QUALITY PROTEIN: anthocyanidin 3-O-glucosyltransferase 5 [Prunus mume]
19 Hb_054165_010 0.1115698151 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
20 Hb_000192_030 0.112498611 - - PREDICTED: TATA-box-binding protein 2 isoform X1 [Setaria italica]

Gene co-expression network

sample Hb_021142_030 Hb_021142_030 Hb_009385_010 Hb_009385_010 Hb_021142_030--Hb_009385_010 Hb_007747_070 Hb_007747_070 Hb_021142_030--Hb_007747_070 Hb_001410_040 Hb_001410_040 Hb_021142_030--Hb_001410_040 Hb_007894_040 Hb_007894_040 Hb_021142_030--Hb_007894_040 Hb_004788_030 Hb_004788_030 Hb_021142_030--Hb_004788_030 Hb_008821_030 Hb_008821_030 Hb_021142_030--Hb_008821_030 Hb_009385_010--Hb_001410_040 Hb_009385_010--Hb_007747_070 Hb_009385_010--Hb_004788_030 Hb_009385_010--Hb_008821_030 Hb_006083_010 Hb_006083_010 Hb_009385_010--Hb_006083_010 Hb_007747_070--Hb_007894_040 Hb_012146_010 Hb_012146_010 Hb_007747_070--Hb_012146_010 Hb_007747_070--Hb_001410_040 Hb_007747_070--Hb_008821_030 Hb_001410_040--Hb_004788_030 Hb_001410_040--Hb_008821_030 Hb_001410_040--Hb_006083_010 Hb_007894_040--Hb_012146_010 Hb_055877_010 Hb_055877_010 Hb_007894_040--Hb_055877_010 Hb_007894_040--Hb_009385_010 Hb_071654_010 Hb_071654_010 Hb_007894_040--Hb_071654_010 Hb_004788_030--Hb_008821_030 Hb_004788_030--Hb_006083_010 Hb_019429_020 Hb_019429_020 Hb_004788_030--Hb_019429_020 Hb_004788_030--Hb_007747_070 Hb_008821_030--Hb_019429_020 Hb_001117_020 Hb_001117_020 Hb_008821_030--Hb_001117_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0178539 0.0407675 0.0147739 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis