Hb_021165_010

Information

Type -
Description -
Location Contig21165: 3855-8637
Sequence    

Annotation

kegg
ID csv:101229371
description splicing factor U2af large subunit B-like
nr
ID XP_012066195.1
description PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
swissprot
ID Q9ZR40
description Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1
trembl
ID A0A067L2Z8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_23773 PE=4 SV=1
Gene Ontology
ID GO:0005634
description splicing factor u2af large subunit b-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21913: 3882-7601 , PASA_asmbl_21915: 7635-8556
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021165_010 0.0 - - PREDICTED: splicing factor U2af large subunit B-like isoform X1 [Jatropha curcas]
2 Hb_000702_090 0.0414976166 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
3 Hb_016172_030 0.0496392605 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
4 Hb_008289_040 0.0539433119 - - PREDICTED: suppressor of mec-8 and unc-52 protein homolog 1 [Jatropha curcas]
5 Hb_000017_230 0.0593026016 - - hypothetical protein JCGZ_20558 [Jatropha curcas]
6 Hb_060980_010 0.061048359 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
7 Hb_001114_110 0.0618861698 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
8 Hb_065500_020 0.0619335925 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
9 Hb_033312_040 0.0626497963 - - PREDICTED: gamma-tubulin complex component 5-like isoform X1 [Jatropha curcas]
10 Hb_121089_030 0.0666907463 - - PREDICTED: dynamin-related protein 5A [Jatropha curcas]
11 Hb_009615_160 0.0672689598 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
12 Hb_007248_030 0.0702707519 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
13 Hb_001329_200 0.0706127652 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
14 Hb_004037_020 0.0715068529 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
15 Hb_027506_010 0.0729110993 - - PREDICTED: cullin-4 [Jatropha curcas]
16 Hb_086063_020 0.073233359 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
17 Hb_003020_100 0.0734619963 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
18 Hb_001817_170 0.0738957432 - - PREDICTED: AP-1 complex subunit gamma-2-like [Jatropha curcas]
19 Hb_001481_060 0.0743812029 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
20 Hb_030982_010 0.0743988348 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_021165_010 Hb_021165_010 Hb_000702_090 Hb_000702_090 Hb_021165_010--Hb_000702_090 Hb_016172_030 Hb_016172_030 Hb_021165_010--Hb_016172_030 Hb_008289_040 Hb_008289_040 Hb_021165_010--Hb_008289_040 Hb_000017_230 Hb_000017_230 Hb_021165_010--Hb_000017_230 Hb_060980_010 Hb_060980_010 Hb_021165_010--Hb_060980_010 Hb_001114_110 Hb_001114_110 Hb_021165_010--Hb_001114_110 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_000702_090--Hb_023313_040 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_000702_090--Hb_016172_030 Hb_016172_030--Hb_060980_010 Hb_004037_020 Hb_004037_020 Hb_016172_030--Hb_004037_020 Hb_027506_010 Hb_027506_010 Hb_016172_030--Hb_027506_010 Hb_065500_020 Hb_065500_020 Hb_016172_030--Hb_065500_020 Hb_024650_080 Hb_024650_080 Hb_016172_030--Hb_024650_080 Hb_008289_040--Hb_016172_030 Hb_000173_130 Hb_000173_130 Hb_008289_040--Hb_000173_130 Hb_008289_040--Hb_065500_020 Hb_000406_210 Hb_000406_210 Hb_008289_040--Hb_000406_210 Hb_000703_330 Hb_000703_330 Hb_008289_040--Hb_000703_330 Hb_121089_030 Hb_121089_030 Hb_000017_230--Hb_121089_030 Hb_001552_030 Hb_001552_030 Hb_000017_230--Hb_001552_030 Hb_092000_010 Hb_092000_010 Hb_000017_230--Hb_092000_010 Hb_001085_290 Hb_001085_290 Hb_000017_230--Hb_001085_290 Hb_000088_050 Hb_000088_050 Hb_000017_230--Hb_000088_050 Hb_060980_010--Hb_027506_010 Hb_019840_030 Hb_019840_030 Hb_060980_010--Hb_019840_030 Hb_060980_010--Hb_065500_020 Hb_000409_050 Hb_000409_050 Hb_060980_010--Hb_000409_050 Hb_000001_170 Hb_000001_170 Hb_060980_010--Hb_000001_170 Hb_015026_130 Hb_015026_130 Hb_001114_110--Hb_015026_130 Hb_000962_030 Hb_000962_030 Hb_001114_110--Hb_000962_030 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3461 23.7327 27.4521 31.1821 14.0792 16.1023
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.3942 11.2724 13.9878 26.1872 19.6454

CAGE analysis