Hb_021238_050

Information

Type -
Description -
Location Contig21238: 29815-31588
Sequence    

Annotation

kegg
ID rcu:RCOM_0869340
description hypothetical protein
nr
ID XP_002527378.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SN09
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0869340 PE=4 SV=1
Gene Ontology
ID GO:0005768
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22012: 29792-31626
cDNA
(Sanger)
(ID:Location)		 019_O08.ab1: 29792-31474

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021238_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003092_030 0.0718312614 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
3 Hb_006198_080 0.0862149105 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
4 Hb_037887_010 0.0924041716 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
5 Hb_000056_260 0.0932317372 - - hypothetical protein CICLE_v10033822mg [Citrus clementina]
6 Hb_000326_090 0.098064511 - - PREDICTED: glycine-rich RNA-binding protein GRP1A-like [Nelumbo nucifera]
7 Hb_002296_040 0.0981473605 - - PREDICTED: DNA-directed RNA polymerase II subunit 4 [Jatropha curcas]
8 Hb_012305_050 0.0984778044 - - unnamed protein product [Coffea canephora]
9 Hb_066768_010 0.0990192595 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_000083_170 0.0995553676 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
11 Hb_000009_240 0.0999794498 - - PREDICTED: E3 ubiquitin-protein ligase RNF185-like isoform X1 [Jatropha curcas]
12 Hb_002477_330 0.1003920251 - - PREDICTED: glycylpeptide N-tetradecanoyltransferase 1-like [Jatropha curcas]
13 Hb_010180_010 0.1009237956 - - PREDICTED: uncharacterized protein LOC105631104 [Jatropha curcas]
14 Hb_020665_040 0.1015312644 transcription factor TF Family: Jumonji PREDICTED: trichohyalin-like [Malus domestica]
15 Hb_001584_190 0.1017183987 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
16 Hb_005615_080 0.1018938792 - - PREDICTED: uncharacterized protein LOC105649609 [Jatropha curcas]
17 Hb_004767_100 0.1025517117 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
18 Hb_002445_120 0.1033336843 - - secretory carrier membrane protein, putative [Ricinus communis]
19 Hb_003777_310 0.103390024 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000700_110 0.1039800919 - - Vesicle-associated membrane protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_021238_050 Hb_021238_050 Hb_003092_030 Hb_003092_030 Hb_021238_050--Hb_003092_030 Hb_006198_080 Hb_006198_080 Hb_021238_050--Hb_006198_080 Hb_037887_010 Hb_037887_010 Hb_021238_050--Hb_037887_010 Hb_000056_260 Hb_000056_260 Hb_021238_050--Hb_000056_260 Hb_000326_090 Hb_000326_090 Hb_021238_050--Hb_000326_090 Hb_002296_040 Hb_002296_040 Hb_021238_050--Hb_002296_040 Hb_003092_030--Hb_006198_080 Hb_000700_110 Hb_000700_110 Hb_003092_030--Hb_000700_110 Hb_003092_030--Hb_037887_010 Hb_000898_050 Hb_000898_050 Hb_003092_030--Hb_000898_050 Hb_006429_010 Hb_006429_010 Hb_003092_030--Hb_006429_010 Hb_006198_080--Hb_000700_110 Hb_000347_200 Hb_000347_200 Hb_006198_080--Hb_000347_200 Hb_006198_080--Hb_037887_010 Hb_000107_310 Hb_000107_310 Hb_006198_080--Hb_000107_310 Hb_000083_170 Hb_000083_170 Hb_037887_010--Hb_000083_170 Hb_037887_010--Hb_000898_050 Hb_037887_010--Hb_006429_010 Hb_001584_190 Hb_001584_190 Hb_037887_010--Hb_001584_190 Hb_002445_120 Hb_002445_120 Hb_000056_260--Hb_002445_120 Hb_001279_150 Hb_001279_150 Hb_000056_260--Hb_001279_150 Hb_000120_670 Hb_000120_670 Hb_000056_260--Hb_000120_670 Hb_001935_130 Hb_001935_130 Hb_000056_260--Hb_001935_130 Hb_007017_030 Hb_007017_030 Hb_000056_260--Hb_007017_030 Hb_143398_010 Hb_143398_010 Hb_000056_260--Hb_143398_010 Hb_000326_090--Hb_000083_170 Hb_000326_090--Hb_002296_040 Hb_066768_010 Hb_066768_010 Hb_000326_090--Hb_066768_010 Hb_005867_020 Hb_005867_020 Hb_000326_090--Hb_005867_020 Hb_031089_040 Hb_031089_040 Hb_000326_090--Hb_031089_040 Hb_001250_060 Hb_001250_060 Hb_000326_090--Hb_001250_060 Hb_002596_040 Hb_002596_040 Hb_002296_040--Hb_002596_040 Hb_002662_030 Hb_002662_030 Hb_002296_040--Hb_002662_030 Hb_002260_150 Hb_002260_150 Hb_002296_040--Hb_002260_150 Hb_000707_030 Hb_000707_030 Hb_002296_040--Hb_000707_030 Hb_007735_030 Hb_007735_030 Hb_002296_040--Hb_007735_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.8138 8.48895 6.05123 30.3735 18.6339 43.1981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1087 30.4535 24.1953 21.0234 10.8436

CAGE analysis