Hb_021254_010

Information

Type transcription factor
Description TF Family: HSF
Location Contig21254: 4008-6810
Sequence    

Annotation

kegg
ID pop:POPTR_0006s24330g
description POPTRDRAFT_763234; hypothetical protein
nr
ID KDP34084.1
description hypothetical protein JCGZ_07655 [Jatropha curcas]
swissprot
ID P41152
description Heat shock factor protein HSF30 OS=Solanum peruvianum GN=HSF30 PE=2 SV=1
trembl
ID A0A067KQI1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07655 PE=3 SV=1
Gene Ontology
ID GO:0005634
description heat shock factor protein hsf30 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22015: 4209-6804 , PASA_asmbl_22016: 4960-5346
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021254_010 0.0 transcription factor TF Family: HSF hypothetical protein JCGZ_07655 [Jatropha curcas]
2 Hb_000302_300 0.1665370726 - - PREDICTED: heat shock protein 83 [Populus euphratica]
3 Hb_000631_140 0.1822938225 - - PREDICTED: chaperone protein ClpB1 [Jatropha curcas]
4 Hb_006721_070 0.1882726701 - - PREDICTED: 70 kDa peptidyl-prolyl isomerase-like [Jatropha curcas]
5 Hb_006629_020 0.1994573324 - - ferric reductase oxidase [Manihot esculenta]
6 Hb_078106_010 0.201066176 - - seed maturation protein PM37 [Populus trichocarpa]
7 Hb_006573_010 0.2014783092 - - heat shock protein [Hevea brasiliensis]
8 Hb_006351_060 0.2117691957 - - PREDICTED: 17.8 kDa class I heat shock protein-like [Cucumis sativus]
9 Hb_000991_050 0.2128293371 - - PREDICTED: uncharacterized protein LOC105636325 [Jatropha curcas]
10 Hb_002804_030 0.224172134 - - PREDICTED: probable protein phosphatase 2C 4 [Jatropha curcas]
11 Hb_000434_010 0.2294760329 - - PREDICTED: protein starmaker [Jatropha curcas]
12 Hb_012753_040 0.2427490992 - - PREDICTED: F-box protein PP2-A12 isoform X1 [Jatropha curcas]
13 Hb_010020_010 0.2485784052 - - cytosolic class II low molecular weight heat shock protein [Prunus dulcis]
14 Hb_000922_220 0.2498002514 - - PREDICTED: serine/threonine-protein kinase ATM-like [Jatropha curcas]
15 Hb_000015_160 0.2516226794 - - Heat shock cognate 70 kDa protein 1 [Triticum urartu]
16 Hb_004296_010 0.2531512087 - - PREDICTED: activator of 90 kDa heat shock protein ATPase homolog 1 [Jatropha curcas]
17 Hb_001477_040 0.2532887848 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_002843_220 0.2572882024 - - PREDICTED: small heat shock protein, chloroplastic [Jatropha curcas]
19 Hb_000656_030 0.2582946504 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000796_050 0.2599542741 - - galactinol synthase [Manihot esculenta]

Gene co-expression network

sample Hb_021254_010 Hb_021254_010 Hb_000302_300 Hb_000302_300 Hb_021254_010--Hb_000302_300 Hb_000631_140 Hb_000631_140 Hb_021254_010--Hb_000631_140 Hb_006721_070 Hb_006721_070 Hb_021254_010--Hb_006721_070 Hb_006629_020 Hb_006629_020 Hb_021254_010--Hb_006629_020 Hb_078106_010 Hb_078106_010 Hb_021254_010--Hb_078106_010 Hb_006573_010 Hb_006573_010 Hb_021254_010--Hb_006573_010 Hb_002843_220 Hb_002843_220 Hb_000302_300--Hb_002843_220 Hb_000302_300--Hb_006573_010 Hb_020247_050 Hb_020247_050 Hb_000302_300--Hb_020247_050 Hb_000302_300--Hb_000631_140 Hb_000991_050 Hb_000991_050 Hb_000302_300--Hb_000991_050 Hb_000015_160 Hb_000015_160 Hb_000631_140--Hb_000015_160 Hb_012753_040 Hb_012753_040 Hb_000631_140--Hb_012753_040 Hb_002804_030 Hb_002804_030 Hb_000631_140--Hb_002804_030 Hb_010921_020 Hb_010921_020 Hb_000631_140--Hb_010921_020 Hb_000631_140--Hb_000991_050 Hb_006721_070--Hb_000991_050 Hb_006721_070--Hb_000302_300 Hb_006721_070--Hb_006573_010 Hb_000997_150 Hb_000997_150 Hb_006721_070--Hb_000997_150 Hb_004296_010 Hb_004296_010 Hb_006721_070--Hb_004296_010 Hb_006629_020--Hb_078106_010 Hb_167973_010 Hb_167973_010 Hb_006629_020--Hb_167973_010 Hb_005799_020 Hb_005799_020 Hb_006629_020--Hb_005799_020 Hb_006629_020--Hb_006573_010 Hb_000922_220 Hb_000922_220 Hb_006629_020--Hb_000922_220 Hb_004875_010 Hb_004875_010 Hb_006629_020--Hb_004875_010 Hb_001411_050 Hb_001411_050 Hb_078106_010--Hb_001411_050 Hb_006351_060 Hb_006351_060 Hb_078106_010--Hb_006351_060 Hb_000281_070 Hb_000281_070 Hb_078106_010--Hb_000281_070 Hb_006846_080 Hb_006846_080 Hb_078106_010--Hb_006846_080 Hb_023771_020 Hb_023771_020 Hb_078106_010--Hb_023771_020 Hb_006573_010--Hb_012753_040 Hb_007257_010 Hb_007257_010 Hb_006573_010--Hb_007257_010 Hb_001766_040 Hb_001766_040 Hb_006573_010--Hb_001766_040 Hb_006573_010--Hb_020247_050 Hb_006573_010--Hb_000991_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.1345 120.888 32.0191 55.0472 115.88 8.16248
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.57259 2.23414 1.53291 12.0097 115.741

CAGE analysis