Hb_021254_030

Information

Type -
Description -
Location Contig21254: 14210-20298
Sequence    

Annotation

kegg
ID rcu:RCOM_0706000
description Grave disease carrier protein, putative
nr
ID XP_012077256.1
description PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
swissprot
ID P16260
description Graves disease carrier protein OS=Homo sapiens GN=SLC25A16 PE=1 SV=3
trembl
ID A0A067KP62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07651 PE=3 SV=1
Gene Ontology
ID GO:0055085
description graves disease carrier protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22019: 14239-20205 , PASA_asmbl_22021: 16149-16290
cDNA
(Sanger)
(ID:Location)		 008_F21.ab1: 18831-20203 , 018_L19.ab1: 18650-20203

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021254_030 0.0 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
2 Hb_004109_200 0.0686978681 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
3 Hb_001195_690 0.080143072 - - PREDICTED: E3 ubiquitin-protein ligase RNF185 [Jatropha curcas]
4 Hb_010381_070 0.0825674564 - - PREDICTED: protein STU1-like [Jatropha curcas]
5 Hb_000139_410 0.0826137308 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
6 Hb_009615_150 0.0884962824 - - PREDICTED: transcription elongation factor SPT4 homolog 2 [Jatropha curcas]
7 Hb_003994_180 0.088756986 - - PREDICTED: probable mitochondrial adenine nucleotide transporter BTL1 [Jatropha curcas]
8 Hb_000445_180 0.0911327226 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
9 Hb_004722_060 0.0916716872 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
10 Hb_001584_330 0.0942509816 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
11 Hb_007908_020 0.0943973795 - - zinc finger family protein [Populus trichocarpa]
12 Hb_004055_010 0.0946256233 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
13 Hb_004242_060 0.0948262261 - - PREDICTED: nicotinamidase 2-like [Jatropha curcas]
14 Hb_026198_050 0.0951720973 - - PREDICTED: subtilisin-like protease SBT3.3 [Jatropha curcas]
15 Hb_000621_080 0.0967055361 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001623_420 0.0967827359 - - nucleotide binding protein, putative [Ricinus communis]
17 Hb_061802_020 0.0995541245 - - zinc finger family protein [Populus trichocarpa]
18 Hb_004812_010 0.1029134971 - - PREDICTED: probable ADP-ribosylation factor GTPase-activating protein AGD6 [Jatropha curcas]
19 Hb_002150_080 0.1032039595 - - ubiquitin-conjugating enzyme E2, putative [Ricinus communis]
20 Hb_002762_060 0.1037176416 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]

Gene co-expression network

sample Hb_021254_030 Hb_021254_030 Hb_004109_200 Hb_004109_200 Hb_021254_030--Hb_004109_200 Hb_001195_690 Hb_001195_690 Hb_021254_030--Hb_001195_690 Hb_010381_070 Hb_010381_070 Hb_021254_030--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_021254_030--Hb_000139_410 Hb_009615_150 Hb_009615_150 Hb_021254_030--Hb_009615_150 Hb_003994_180 Hb_003994_180 Hb_021254_030--Hb_003994_180 Hb_004109_200--Hb_010381_070 Hb_004109_200--Hb_000139_410 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_004324_310 Hb_004324_310 Hb_001195_690--Hb_004324_310 Hb_003052_100 Hb_003052_100 Hb_001195_690--Hb_003052_100 Hb_001195_690--Hb_003994_180 Hb_158092_070 Hb_158092_070 Hb_001195_690--Hb_158092_070 Hb_004657_020 Hb_004657_020 Hb_001195_690--Hb_004657_020 Hb_010381_070--Hb_000139_410 Hb_010381_070--Hb_002375_020 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_000139_410--Hb_001584_330 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_005928_110 Hb_005928_110 Hb_009615_150--Hb_005928_110 Hb_000445_180 Hb_000445_180 Hb_009615_150--Hb_000445_180 Hb_026198_050 Hb_026198_050 Hb_009615_150--Hb_026198_050 Hb_000109_160 Hb_000109_160 Hb_009615_150--Hb_000109_160 Hb_000621_080 Hb_000621_080 Hb_009615_150--Hb_000621_080 Hb_023226_040 Hb_023226_040 Hb_003994_180--Hb_023226_040 Hb_000808_040 Hb_000808_040 Hb_003994_180--Hb_000808_040 Hb_003994_180--Hb_004324_310 Hb_001138_050 Hb_001138_050 Hb_003994_180--Hb_001138_050 Hb_159558_030 Hb_159558_030 Hb_003994_180--Hb_159558_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
115.537 68.8745 33.7518 34.4743 84.8285 91.7518
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
135.903 82.3339 91.4023 23.774 10.061

CAGE analysis