Hb_021297_050

Information

Type -
Description -
Location Contig21297: 46079-51187
Sequence    

Annotation

kegg
ID rcu:RCOM_0623540
description signal recognition particle receptor alpha subunit, putative
nr
ID XP_012071520.1
description PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
swissprot
ID Q9U5L1
description Signal recognition particle receptor subunit alpha homolog OS=Drosophila melanogaster GN=Gtp-bp PE=1 SV=2
trembl
ID A0A067KRE3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04040 PE=4 SV=1
Gene Ontology
ID GO:0005785
description signal recognition particle receptor subunit alpha homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22031: 46071-51220
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021297_050 0.0 - - PREDICTED: signal recognition particle receptor subunit alpha [Jatropha curcas]
2 Hb_000116_500 0.0628882641 - - PREDICTED: trafficking protein particle complex subunit 11 [Jatropha curcas]
3 Hb_001195_320 0.0648684413 - - PREDICTED: S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase [Jatropha curcas]
4 Hb_001860_040 0.0664911291 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X4 [Jatropha curcas]
5 Hb_000667_030 0.0675399276 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
6 Hb_000213_010 0.0694422727 - - PREDICTED: villin-3-like isoform X1 [Populus euphratica]
7 Hb_000029_300 0.0707465707 - - hypothetical protein JCGZ_10048 [Jatropha curcas]
8 Hb_025477_040 0.0734040857 - - PREDICTED: post-GPI attachment to proteins factor 3 [Jatropha curcas]
9 Hb_012022_090 0.0755978947 - - PREDICTED: LIMR family protein At5g01460 [Gossypium raimondii]
10 Hb_000390_320 0.0756175892 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
11 Hb_005065_010 0.0767790824 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
12 Hb_001221_080 0.0781516904 - - PREDICTED: conserved oligomeric Golgi complex subunit 2 isoform X2 [Jatropha curcas]
13 Hb_123903_010 0.0782814574 transcription factor TF Family: IWS1 conserved hypothetical protein [Ricinus communis]
14 Hb_004195_200 0.078388204 - - glycosyl transferase family 1 family protein [Populus trichocarpa]
15 Hb_012395_140 0.0784053515 - - PREDICTED: uncharacterized protein LOC105638411 [Jatropha curcas]
16 Hb_001550_060 0.0795261009 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]
17 Hb_001343_040 0.0817637451 - - PREDICTED: uncharacterized protein LOC105638555 [Jatropha curcas]
18 Hb_002329_040 0.082082769 - - PREDICTED: uncharacterized protein LOC105648065 [Jatropha curcas]
19 Hb_007576_110 0.0831945313 - - Endoplasmic reticulum vesicle transporter protein [Theobroma cacao]
20 Hb_014361_070 0.0851852136 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_021297_050 Hb_021297_050 Hb_000116_500 Hb_000116_500 Hb_021297_050--Hb_000116_500 Hb_001195_320 Hb_001195_320 Hb_021297_050--Hb_001195_320 Hb_001860_040 Hb_001860_040 Hb_021297_050--Hb_001860_040 Hb_000667_030 Hb_000667_030 Hb_021297_050--Hb_000667_030 Hb_000213_010 Hb_000213_010 Hb_021297_050--Hb_000213_010 Hb_000029_300 Hb_000029_300 Hb_021297_050--Hb_000029_300 Hb_002811_060 Hb_002811_060 Hb_000116_500--Hb_002811_060 Hb_009545_100 Hb_009545_100 Hb_000116_500--Hb_009545_100 Hb_012022_090 Hb_012022_090 Hb_000116_500--Hb_012022_090 Hb_123903_010 Hb_123903_010 Hb_000116_500--Hb_123903_010 Hb_000116_500--Hb_001195_320 Hb_000166_130 Hb_000166_130 Hb_001195_320--Hb_000166_130 Hb_003371_110 Hb_003371_110 Hb_001195_320--Hb_003371_110 Hb_002329_040 Hb_002329_040 Hb_001195_320--Hb_002329_040 Hb_003029_110 Hb_003029_110 Hb_001195_320--Hb_003029_110 Hb_014361_070 Hb_014361_070 Hb_001195_320--Hb_014361_070 Hb_000183_020 Hb_000183_020 Hb_001195_320--Hb_000183_020 Hb_001860_040--Hb_001195_320 Hb_001860_040--Hb_002329_040 Hb_007426_130 Hb_007426_130 Hb_001860_040--Hb_007426_130 Hb_001343_040 Hb_001343_040 Hb_001860_040--Hb_001343_040 Hb_012053_080 Hb_012053_080 Hb_001860_040--Hb_012053_080 Hb_010294_010 Hb_010294_010 Hb_000667_030--Hb_010294_010 Hb_005215_010 Hb_005215_010 Hb_000667_030--Hb_005215_010 Hb_012518_070 Hb_012518_070 Hb_000667_030--Hb_012518_070 Hb_000494_050 Hb_000494_050 Hb_000667_030--Hb_000494_050 Hb_000317_100 Hb_000317_100 Hb_000667_030--Hb_000317_100 Hb_000213_010--Hb_012022_090 Hb_000213_010--Hb_000029_300 Hb_001221_080 Hb_001221_080 Hb_000213_010--Hb_001221_080 Hb_003683_020 Hb_003683_020 Hb_000213_010--Hb_003683_020 Hb_000213_010--Hb_000116_500 Hb_000060_090 Hb_000060_090 Hb_000029_300--Hb_000060_090 Hb_000923_010 Hb_000923_010 Hb_000029_300--Hb_000923_010 Hb_000029_300--Hb_014361_070 Hb_000340_530 Hb_000340_530 Hb_000029_300--Hb_000340_530 Hb_007576_110 Hb_007576_110 Hb_000029_300--Hb_007576_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.0595 40.514 25.2906 44.0812 61.2261 47.422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.8708 21.8508 39.0931 41.9359 33.8994

CAGE analysis