Hb_021346_020

Information

Type -
Description -
Location Contig21346: 14205-19723
Sequence    

Annotation

kegg
ID rcu:RCOM_1449670
description DNA-damage-inducible protein f, putative
nr
ID KDP41728.1
description hypothetical protein JCGZ_26746 [Jatropha curcas]
swissprot
ID Q8W4G3
description MATE efflux family protein 4, chloroplastic OS=Arabidopsis thaliana GN=DTX46 PE=2 SV=1
trembl
ID A0A067L3G8
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_26746 PE=3 SV=1
Gene Ontology
ID GO:0009536
description dna-damage-inducible protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22077: 14676-16406 , PASA_asmbl_22078: 19094-19716
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021346_020 0.0 - - hypothetical protein JCGZ_26746 [Jatropha curcas]
2 Hb_015001_030 0.0880269858 - - inosine-uridine preferring nucleoside hydrolase family protein [Populus trichocarpa]
3 Hb_002918_120 0.0968272941 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_014250_010 0.102106764 - - PREDICTED: alpha-mannosidase-like isoform X2 [Populus euphratica]
5 Hb_004446_060 0.1030140723 - - neutral/alkaline invertase [Manihot esculenta]
6 Hb_005766_010 0.1051349202 - - serine carboxypeptidase, putative [Ricinus communis]
7 Hb_000616_010 0.106115509 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001135_010 0.1077718279 - - hypothetical protein CICLE_v10024612mg [Citrus clementina]
9 Hb_000866_190 0.1091128593 - - transcription factor, putative [Ricinus communis]
10 Hb_005663_090 0.1106995645 - - PREDICTED: alcohol dehydrogenase-like 7 [Jatropha curcas]
11 Hb_001638_150 0.1128871363 - - acyltransferase, putative [Ricinus communis]
12 Hb_001195_740 0.113992544 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
13 Hb_002503_050 0.114074835 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
14 Hb_001345_020 0.1154741425 - - hypothetical protein POPTR_0007s10400g [Populus trichocarpa]
15 Hb_001157_190 0.116033342 - - PREDICTED: protein YLS3 [Jatropha curcas]
16 Hb_000941_010 0.1198895922 - - hypothetical protein RCOM_0504460 [Ricinus communis]
17 Hb_001437_260 0.1204501294 - - PREDICTED: protein FAM98B-like [Jatropha curcas]
18 Hb_000018_120 0.1216056137 - - ankyrin repeat-containing protein, putative [Ricinus communis]
19 Hb_000189_160 0.1232343039 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
20 Hb_000152_120 0.1276008512 - - alpha-l-fucosidase, putative [Ricinus communis]

Gene co-expression network

sample Hb_021346_020 Hb_021346_020 Hb_015001_030 Hb_015001_030 Hb_021346_020--Hb_015001_030 Hb_002918_120 Hb_002918_120 Hb_021346_020--Hb_002918_120 Hb_014250_010 Hb_014250_010 Hb_021346_020--Hb_014250_010 Hb_004446_060 Hb_004446_060 Hb_021346_020--Hb_004446_060 Hb_005766_010 Hb_005766_010 Hb_021346_020--Hb_005766_010 Hb_000616_010 Hb_000616_010 Hb_021346_020--Hb_000616_010 Hb_001638_150 Hb_001638_150 Hb_015001_030--Hb_001638_150 Hb_015001_030--Hb_014250_010 Hb_001135_010 Hb_001135_010 Hb_015001_030--Hb_001135_010 Hb_093218_010 Hb_093218_010 Hb_015001_030--Hb_093218_010 Hb_003656_090 Hb_003656_090 Hb_015001_030--Hb_003656_090 Hb_002918_120--Hb_004446_060 Hb_001195_740 Hb_001195_740 Hb_002918_120--Hb_001195_740 Hb_000834_220 Hb_000834_220 Hb_002918_120--Hb_000834_220 Hb_005144_060 Hb_005144_060 Hb_002918_120--Hb_005144_060 Hb_001437_260 Hb_001437_260 Hb_002918_120--Hb_001437_260 Hb_000096_210 Hb_000096_210 Hb_014250_010--Hb_000096_210 Hb_009554_030 Hb_009554_030 Hb_014250_010--Hb_009554_030 Hb_014250_010--Hb_005766_010 Hb_000866_190 Hb_000866_190 Hb_014250_010--Hb_000866_190 Hb_014250_010--Hb_001638_150 Hb_004446_060--Hb_001437_260 Hb_007007_130 Hb_007007_130 Hb_004446_060--Hb_007007_130 Hb_002851_070 Hb_002851_070 Hb_004446_060--Hb_002851_070 Hb_004832_010 Hb_004832_010 Hb_004446_060--Hb_004832_010 Hb_000594_160 Hb_000594_160 Hb_005766_010--Hb_000594_160 Hb_005766_010--Hb_000866_190 Hb_005766_010--Hb_000096_210 Hb_000017_320 Hb_000017_320 Hb_005766_010--Hb_000017_320 Hb_005731_070 Hb_005731_070 Hb_005766_010--Hb_005731_070 Hb_000692_110 Hb_000692_110 Hb_000616_010--Hb_000692_110 Hb_000616_010--Hb_005766_010 Hb_000616_010--Hb_000866_190 Hb_000616_010--Hb_014250_010 Hb_005663_090 Hb_005663_090 Hb_000616_010--Hb_005663_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.105579 1.01719 3.85423 2.82083 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0439424 0.0345755 0.0328041 3.2456 2.08398

CAGE analysis