Hb_021346_030

Information

Type -
Description -
Location Contig21346: 20478-23248
Sequence    

Annotation

kegg
ID pop:POPTR_0009s12540g
description POPTRDRAFT_201129; hypothetical protein
nr
ID XP_011047558.1
description PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
swissprot
ID P54454
description Probable RNA-binding protein YqeI OS=Bacillus subtilis (strain 168) GN=yqeI PE=3 SV=1
trembl
ID A0A067KZX9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26749 PE=4 SV=1
Gene Ontology
ID GO:0003723
description rna-binding crs1 domain

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22079: 20553-23125
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021346_030 0.0 - - PREDICTED: uncharacterized protein LOC105141875 [Populus euphratica]
2 Hb_000948_170 0.0698219881 - - hypothetical protein JCGZ_06749 [Jatropha curcas]
3 Hb_000627_250 0.0787202016 - - PREDICTED: uncharacterized protein LOC105632682 isoform X1 [Jatropha curcas]
4 Hb_031284_070 0.0800661208 - - PREDICTED: translation initiation factor IF-3, chloroplastic [Jatropha curcas]
5 Hb_069662_010 0.0840073735 - - PREDICTED: uncharacterized protein LOC103320051 [Prunus mume]
6 Hb_000080_120 0.0865985682 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62350-like [Jatropha curcas]
7 Hb_000816_100 0.086727371 - - PREDICTED: APO protein 1, chloroplastic isoform X1 [Jatropha curcas]
8 Hb_000346_060 0.0885779839 - - hypothetical protein JCGZ_19590 [Jatropha curcas]
9 Hb_000224_160 0.0892047065 - - PREDICTED: phenylalanine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
10 Hb_036790_080 0.0903900432 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 39 [Jatropha curcas]
11 Hb_000181_240 0.0939235037 - - PREDICTED: uncharacterized protein LOC105637672 [Jatropha curcas]
12 Hb_003440_060 0.0973925003 - - PREDICTED: translin-associated protein X isoform X1 [Jatropha curcas]
13 Hb_000015_100 0.1003830823 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
14 Hb_002163_040 0.1004234248 - - conserved hypothetical protein [Ricinus communis]
15 Hb_001205_300 0.1010636532 - - glutamyl-tRNA synthetase 1, 2, putative [Ricinus communis]
16 Hb_001489_050 0.1011769547 - - PREDICTED: protein TWIN LOV 1 isoform X1 [Jatropha curcas]
17 Hb_006117_040 0.1016021783 - - PREDICTED: seed biotin-containing protein SBP65 [Jatropha curcas]
18 Hb_001660_120 0.1020220731 - - PREDICTED: adenylate kinase, chloroplastic [Jatropha curcas]
19 Hb_004218_280 0.1023441271 - - Exoenzymes regulatory protein aepA precursor, putative [Ricinus communis]
20 Hb_000184_170 0.1039736696 - - hypothetical protein RCOM_1213430 [Ricinus communis]

Gene co-expression network

sample Hb_021346_030 Hb_021346_030 Hb_000948_170 Hb_000948_170 Hb_021346_030--Hb_000948_170 Hb_000627_250 Hb_000627_250 Hb_021346_030--Hb_000627_250 Hb_031284_070 Hb_031284_070 Hb_021346_030--Hb_031284_070 Hb_069662_010 Hb_069662_010 Hb_021346_030--Hb_069662_010 Hb_000080_120 Hb_000080_120 Hb_021346_030--Hb_000080_120 Hb_000816_100 Hb_000816_100 Hb_021346_030--Hb_000816_100 Hb_000015_100 Hb_000015_100 Hb_000948_170--Hb_000015_100 Hb_000948_170--Hb_031284_070 Hb_000948_170--Hb_000627_250 Hb_001205_300 Hb_001205_300 Hb_000948_170--Hb_001205_300 Hb_000948_170--Hb_000816_100 Hb_000627_250--Hb_031284_070 Hb_000627_250--Hb_000015_100 Hb_001259_020 Hb_001259_020 Hb_000627_250--Hb_001259_020 Hb_025557_050 Hb_025557_050 Hb_000627_250--Hb_025557_050 Hb_001660_120 Hb_001660_120 Hb_031284_070--Hb_001660_120 Hb_000740_050 Hb_000740_050 Hb_031284_070--Hb_000740_050 Hb_031284_070--Hb_001205_300 Hb_004531_140 Hb_004531_140 Hb_069662_010--Hb_004531_140 Hb_000608_380 Hb_000608_380 Hb_069662_010--Hb_000608_380 Hb_002184_150 Hb_002184_150 Hb_069662_010--Hb_002184_150 Hb_069662_010--Hb_001205_300 Hb_002079_030 Hb_002079_030 Hb_069662_010--Hb_002079_030 Hb_002163_040 Hb_002163_040 Hb_000080_120--Hb_002163_040 Hb_002893_070 Hb_002893_070 Hb_000080_120--Hb_002893_070 Hb_000804_040 Hb_000804_040 Hb_000080_120--Hb_000804_040 Hb_000224_160 Hb_000224_160 Hb_000080_120--Hb_000224_160 Hb_000076_130 Hb_000076_130 Hb_000080_120--Hb_000076_130 Hb_012022_150 Hb_012022_150 Hb_000080_120--Hb_012022_150 Hb_048141_020 Hb_048141_020 Hb_000816_100--Hb_048141_020 Hb_001089_060 Hb_001089_060 Hb_000816_100--Hb_001089_060 Hb_000816_100--Hb_001259_020 Hb_023278_010 Hb_023278_010 Hb_000816_100--Hb_023278_010 Hb_011931_060 Hb_011931_060 Hb_000816_100--Hb_011931_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.7896 10.8156 18.6582 12.8321 17.1853 25.8066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.2828 14.6384 11.2477 8.04426 36.3297

CAGE analysis