Hb_021346_040

Information

Type -
Description -
Location Contig21346: 26733-28136
Sequence    

Annotation

kegg
ID rcu:RCOM_1449530
description hypothetical protein
nr
ID KDP41733.1
description hypothetical protein JCGZ_26751 [Jatropha curcas]
swissprot
ID A2WY46
description Protein terminal ear1 homolog OS=Oryza sativa subsp. indica GN=PLA2 PE=2 SV=1
trembl
ID A0A067L3H2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_26751 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021346_040 0.0 - - hypothetical protein JCGZ_26751 [Jatropha curcas]
2 Hb_000392_460 0.1014562644 - - Pectate lyase precursor, putative [Ricinus communis]
3 Hb_000853_040 0.1098128513 - - conserved hypothetical protein [Ricinus communis]
4 Hb_083822_010 0.1651338257 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
5 Hb_167452_010 0.1985679886 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
6 Hb_003938_030 0.2433366866 transcription factor TF Family: ERF ethylene-responsive transcription factor 2 [Hevea brasiliensis]
7 Hb_025669_030 0.2644272198 - - PREDICTED: uncharacterized protein LOC105649301 [Jatropha curcas]
8 Hb_001623_310 0.2716324563 - - hypothetical protein CISIN_1g042596mg [Citrus sinensis]
9 Hb_000375_230 0.2960334283 - - Chain A, Anomalous Substructure Of Hydroxynitrile Lyase
10 Hb_011505_010 0.2969803183 - - -
11 Hb_105226_010 0.2974989957 - - PREDICTED: ammonium transporter 3 member 1-like [Jatropha curcas]
12 Hb_011972_010 0.3022587182 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001104_050 0.3271170473 - - -
14 Hb_006925_090 0.3304350461 - - PREDICTED: protein HAPLESS 2 [Populus euphratica]
15 Hb_040359_010 0.3318995921 - - triacylglycerol lipase, putative [Ricinus communis]
16 Hb_007145_010 0.336453226 - - ammonium transporter 3.1-like protein [Camellia sinensis]
17 Hb_000260_150 0.3528947457 - - hypothetical protein POPTR_0344s002001g, partial [Populus trichocarpa]
18 Hb_001410_050 0.3535157447 - - putative polyprotein [Oryza sativa Japonica Group]
19 Hb_006355_120 0.3535389013 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002259_180 0.3541464303 - - -

Gene co-expression network

sample Hb_021346_040 Hb_021346_040 Hb_000392_460 Hb_000392_460 Hb_021346_040--Hb_000392_460 Hb_000853_040 Hb_000853_040 Hb_021346_040--Hb_000853_040 Hb_083822_010 Hb_083822_010 Hb_021346_040--Hb_083822_010 Hb_167452_010 Hb_167452_010 Hb_021346_040--Hb_167452_010 Hb_003938_030 Hb_003938_030 Hb_021346_040--Hb_003938_030 Hb_025669_030 Hb_025669_030 Hb_021346_040--Hb_025669_030 Hb_000392_460--Hb_083822_010 Hb_000392_460--Hb_000853_040 Hb_001623_310 Hb_001623_310 Hb_000392_460--Hb_001623_310 Hb_000392_460--Hb_025669_030 Hb_000392_460--Hb_003938_030 Hb_000853_040--Hb_167452_010 Hb_000853_040--Hb_083822_010 Hb_000853_040--Hb_003938_030 Hb_001104_050 Hb_001104_050 Hb_000853_040--Hb_001104_050 Hb_083822_010--Hb_003938_030 Hb_000375_230 Hb_000375_230 Hb_083822_010--Hb_000375_230 Hb_083822_010--Hb_001623_310 Hb_010661_040 Hb_010661_040 Hb_167452_010--Hb_010661_040 Hb_167452_010--Hb_000392_460 Hb_000260_150 Hb_000260_150 Hb_167452_010--Hb_000260_150 Hb_016859_010 Hb_016859_010 Hb_167452_010--Hb_016859_010 Hb_105226_010 Hb_105226_010 Hb_003938_030--Hb_105226_010 Hb_000540_090 Hb_000540_090 Hb_003938_030--Hb_000540_090 Hb_040359_010 Hb_040359_010 Hb_003938_030--Hb_040359_010 Hb_001269_460 Hb_001269_460 Hb_003938_030--Hb_001269_460 Hb_003938_030--Hb_000375_230 Hb_025669_030--Hb_001623_310 Hb_025669_030--Hb_083822_010 Hb_171062_010 Hb_171062_010 Hb_025669_030--Hb_171062_010 Hb_000696_020 Hb_000696_020 Hb_025669_030--Hb_000696_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0231825 0.0366084 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0416176 0 0 0

CAGE analysis