Hb_021374_030

Information

Type -
Description -
Location Contig21374: 30239-34513
Sequence    

Annotation

kegg
ID rcu:RCOM_0351490
description hypothetical protein
nr
ID XP_002532631.1
description hypothetical protein RCOM_0351490 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T312
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0351490 PE=4 SV=1
Gene Ontology
ID GO:0005634
description no apical meristem family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22086: 22521-34176
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021374_030 0.0 - - hypothetical protein RCOM_0351490 [Ricinus communis]
2 Hb_006913_020 0.0544574551 - - PREDICTED: uncharacterized protein LOC105649145 isoform X1 [Jatropha curcas]
3 Hb_007413_010 0.0639949742 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
4 Hb_000599_270 0.0640696186 - - PREDICTED: serine/threonine protein phosphatase 2A regulatory subunit B''beta isoform X3 [Jatropha curcas]
5 Hb_000237_200 0.0667435258 - - PREDICTED: SUMO-activating enzyme subunit 2 [Jatropha curcas]
6 Hb_000749_010 0.0675869175 - - PREDICTED: non-canonical poly(A) RNA polymerase PAPD5 isoform X1 [Jatropha curcas]
7 Hb_183433_010 0.069525522 - - PREDICTED: FAD synthase isoform X3 [Jatropha curcas]
8 Hb_000375_390 0.0707384301 - - poly-A binding protein, putative [Ricinus communis]
9 Hb_000797_040 0.0709299445 - - PREDICTED: uncharacterized protein LOC105645914 [Jatropha curcas]
10 Hb_003098_070 0.0713561379 - - PREDICTED: uncharacterized protein LOC105633456 [Jatropha curcas]
11 Hb_000035_090 0.0723359884 - - PREDICTED: stromal cell-derived factor 2-like protein [Jatropha curcas]
12 Hb_030414_040 0.0727777652 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH3 isoform X1 [Jatropha curcas]
13 Hb_004096_240 0.0743040173 - - PREDICTED: uncharacterized protein LOC105638702 [Jatropha curcas]
14 Hb_000061_180 0.0743782043 - - exonuclease, putative [Ricinus communis]
15 Hb_000212_230 0.0745916161 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
16 Hb_002173_070 0.0747258138 - - MRG family protein isoform 2 [Theobroma cacao]
17 Hb_010863_050 0.0748629847 - - OTU domain-containing protein 6B, putative [Ricinus communis]
18 Hb_002205_230 0.0762791012 - - glycerol-3-phosphate dehydrogenase, putative [Ricinus communis]
19 Hb_012150_030 0.0770476821 - - PREDICTED: aspartate--tRNA ligase, mitochondrial [Jatropha curcas]
20 Hb_001377_190 0.0772982845 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_021374_030 Hb_021374_030 Hb_006913_020 Hb_006913_020 Hb_021374_030--Hb_006913_020 Hb_007413_010 Hb_007413_010 Hb_021374_030--Hb_007413_010 Hb_000599_270 Hb_000599_270 Hb_021374_030--Hb_000599_270 Hb_000237_200 Hb_000237_200 Hb_021374_030--Hb_000237_200 Hb_000749_010 Hb_000749_010 Hb_021374_030--Hb_000749_010 Hb_183433_010 Hb_183433_010 Hb_021374_030--Hb_183433_010 Hb_006913_020--Hb_007413_010 Hb_008948_020 Hb_008948_020 Hb_006913_020--Hb_008948_020 Hb_001377_190 Hb_001377_190 Hb_006913_020--Hb_001377_190 Hb_001789_110 Hb_001789_110 Hb_006913_020--Hb_001789_110 Hb_003098_070 Hb_003098_070 Hb_006913_020--Hb_003098_070 Hb_003117_030 Hb_003117_030 Hb_007413_010--Hb_003117_030 Hb_007413_010--Hb_008948_020 Hb_007413_010--Hb_001377_190 Hb_001925_060 Hb_001925_060 Hb_007413_010--Hb_001925_060 Hb_007413_010--Hb_001789_110 Hb_002581_010 Hb_002581_010 Hb_000599_270--Hb_002581_010 Hb_000599_270--Hb_006913_020 Hb_000599_270--Hb_007413_010 Hb_017469_110 Hb_017469_110 Hb_000599_270--Hb_017469_110 Hb_002205_230 Hb_002205_230 Hb_000599_270--Hb_002205_230 Hb_000035_090 Hb_000035_090 Hb_000237_200--Hb_000035_090 Hb_000300_470 Hb_000300_470 Hb_000237_200--Hb_000300_470 Hb_002876_300 Hb_002876_300 Hb_000237_200--Hb_002876_300 Hb_114310_070 Hb_114310_070 Hb_000237_200--Hb_114310_070 Hb_002774_190 Hb_002774_190 Hb_000237_200--Hb_002774_190 Hb_000749_010--Hb_002205_230 Hb_000749_010--Hb_001377_190 Hb_000363_310 Hb_000363_310 Hb_000749_010--Hb_000363_310 Hb_000749_010--Hb_000599_270 Hb_000111_170 Hb_000111_170 Hb_000749_010--Hb_000111_170 Hb_000976_140 Hb_000976_140 Hb_183433_010--Hb_000976_140 Hb_171900_090 Hb_171900_090 Hb_183433_010--Hb_171900_090 Hb_002413_010 Hb_002413_010 Hb_183433_010--Hb_002413_010 Hb_000189_600 Hb_000189_600 Hb_183433_010--Hb_000189_600 Hb_007248_030 Hb_007248_030 Hb_183433_010--Hb_007248_030 Hb_000365_230 Hb_000365_230 Hb_183433_010--Hb_000365_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.89043 8.66516 14.5051 10.0761 5.78464 9.43606
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.29674 9.58372 6.51709 9.40113 16.1825

CAGE analysis